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Commit 86f83e67 authored by elabaron's avatar elabaron
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src/RNAseq.config : add multiqc module

parent a9edf634
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...@@ -106,15 +106,14 @@ profiles { ...@@ -106,15 +106,14 @@ profiles {
time = "12h" time = "12h"
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
} }
withName: coverage{ withName: multiqc {
beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" beforeScript = "source $baseDir/.conda_psmn.sh"
module = "deeptools/3.0.2" conda = "$baseDir/.conda_envs/multiqc_1.7"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 16 cpus = 1
memory = "30GB" memory = "20GB"
time = "24h" time = "12h"
penv = 'openmp16'
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
} }
} }
......
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