diff --git a/src/RNAseq.config b/src/RNAseq.config index ad9dfd42f03860470bdf0c4680cfd528bce3e0bb..5a2e324e0fee127196cbfce2241725aea181c353 100644 --- a/src/RNAseq.config +++ b/src/RNAseq.config @@ -106,17 +106,16 @@ profiles { time = "12h" queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' } - withName: coverage{ - beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" - module = "deeptools/3.0.2" + withName: multiqc { + beforeScript = "source $baseDir/.conda_psmn.sh" + conda = "$baseDir/.conda_envs/multiqc_1.7" executor = "sge" clusterOptions = "-cwd -V" - cpus = 16 - memory = "30GB" - time = "24h" - penv = 'openmp16' + cpus = 1 + memory = "20GB" + time = "12h" queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D' - } + } } } docker {