From 86f83e67afcbdc680396a2c31e5955270a5c7b94 Mon Sep 17 00:00:00 2001
From: Emmanuel Labaronne <emmanuel.labaronne@ens-lyon.fr>
Date: Mon, 28 Sep 2020 12:09:41 +0200
Subject: [PATCH] src/RNAseq.config : add multiqc module
---
src/RNAseq.config | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/src/RNAseq.config b/src/RNAseq.config
index ad9dfd42..5a2e324e 100644
--- a/src/RNAseq.config
+++ b/src/RNAseq.config
@@ -106,17 +106,16 @@ profiles {
time = "12h"
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
}
- withName: coverage{
- beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
- module = "deeptools/3.0.2"
+ withName: multiqc {
+ beforeScript = "source $baseDir/.conda_psmn.sh"
+ conda = "$baseDir/.conda_envs/multiqc_1.7"
executor = "sge"
clusterOptions = "-cwd -V"
- cpus = 16
- memory = "30GB"
- time = "24h"
- penv = 'openmp16'
+ cpus = 1
+ memory = "20GB"
+ time = "12h"
queue = 'CLG6242deb384A,CLG6242deb384C,CLG5218deb192A,CLG5218deb192B,CLG5218deb192C,CLG5218deb192D,SLG5118deb96,SLG6142deb384A,SLG6142deb384B,SLG6142deb384C,SLG6142deb384D'
- }
+ }
}
}
docker {
--
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