Commits · 92ef5bb782c3171ed72691bcde55a5d036cdbfcf · LBMC / Delattre / kmer diff

Sep 13, 2023
- add sample_reads.nf: subworkflow to make number of reads equal between Male and Female · 92ef5bb7
  Laurent Modolo authored 1 year ago
  
  92ef5bb7
Sep 11, 2023
- main.nf: add sample_reads modules · 0d3f5da9
  Laurent Modolo authored 1 year ago
  
  0d3f5da9
- kmerclust_load.R: use vroom to load csv · a636cd0d
  Laurent Modolo authored 1 year ago
  
  a636cd0d
Sep 04, 2023
- src/nextflow.config: add retry on error · 5b03fdb5
  Laurent Modolo authored 1 year ago
  
  5b03fdb5
Aug 30, 2023
- block clustering · 811745ca
  Laurent Modolo authored 1 year ago
  
  811745ca
Aug 05, 2023
- add clustering analysis in addition to boostrap analaysis · 66644725
  Laurent Modolo authored 1 year ago
  
  66644725
Jul 21, 2023
- remove some publisDir · a494a7fb
  Laurent Modolo authored 1 year ago
  
  a494a7fb
Jun 20, 2023
- kmerclust_plot.R: add tidyverse · db3fd56b
  Laurent Modolo authored 1 year ago
  
  db3fd56b
Jun 15, 2023
- kmerclust_plot.R reduce the number of points for the scatter plot · f5a68697
  Laurent Modolo authored 1 year ago
  
  f5a68697
Jun 14, 2023
- kmerclust_plot.R: reduce memory consumption · 79d8a549
  Laurent Modolo authored 1 year ago
  
  79d8a549
Jun 13, 2023
- fix kmer_merge to kmer_plot connection · 1c0e4099
  Laurent Modolo authored 1 year ago
  
  1c0e4099
Jun 12, 2023
- fix typo for kmerclust_plot entry · 73cfaf21
  Laurent Modolo authored 1 year ago
  
  73cfaf21
- kmerclust.R: fix typo · 36fb5d2c
  Laurent Modolo authored 1 year ago
  
  36fb5d2c
- kmerclust.R: fix numeric convertion · c92da733
  Laurent Modolo authored 1 year ago
  
  c92da733
- fix args parsing in R scripts · 601b4bfb
  Laurent Modolo authored 1 year ago
  
  601b4bfb
Jun 09, 2023
- kmerclust.nf: reduce cpu · fdfd84da
  Laurent Modolo authored 1 year ago
  
  fdfd84da
- main.nf: fix typo · af3a7635
  Laurent Modolo authored 1 year ago
  
  af3a7635
- split kmerclust into multiple processes · 765b7e36
  Laurent Modolo authored 1 year ago
  
  765b7e36
- add kmerclust_plot.R · 4f33f1e3
  Laurent Modolo authored 1 year ago
  
  4f33f1e3
- split plot from the analysis · 086a8767
  Laurent Modolo authored 1 year ago
  
  086a8767
Jun 08, 2023
- update kmerclust version · 065bb98a
  Laurent Modolo authored 1 year ago
  
  065bb98a
- main.nf: fix typo · 33f33c7b
  Laurent Modolo authored 1 year ago
  
  33f33c7b
- pass params.csv as a channel to kmerclust · 5f1c445f
  Laurent Modolo authored 1 year ago
  
  5f1c445f
- add projectDir for kmerclust · 00d80ce7
  Laurent Modolo authored 1 year ago
  
  00d80ce7
- mergekmer.nf: fix typo · 30c57a00
  Laurent Modolo authored 1 year ago
  
  30c57a00
- update mergekmer.nf output to match input of kmerclust · f5bd9063
  Laurent Modolo authored 1 year ago
  
  f5bd9063
Jun 07, 2023
- add cpu args to kmerclust · fba1fce0
  Laurent Modolo authored 1 year ago
  
  fba1fce0
- kmerclust: fix process name · 1a3ed11b
  Laurent Modolo authored 1 year ago
  
  1a3ed11b
- add kmerclust module to main.nf · ed018a7e
  Laurent Modolo authored 1 year ago
  
  ed018a7e
- add kmerclust module · 1efc9788
  Laurent Modolo authored 1 year ago
  
  1efc9788
- create new repository for clustering · 13c5b824
  Laurent Modolo authored 1 year ago
  
  13c5b824
Jun 06, 2023
- clustering: add roxygen · c6daedd9
  Laurent Modolo authored 1 year ago
  
  c6daedd9
Jun 05, 2023
- clustering: add boostrap for BIC · 1f87de79
  Laurent Modolo authored 1 year ago
  
  1f87de79
- clustering: add LRT · f9cc4071
  Laurent Modolo authored 1 year ago
  
  f9cc4071
May 31, 2023
- add LTR and BIC · 13335ade
  Laurent Modolo authored 1 year ago
  
  13335ade
- add clustering XY and XO · d5e24c1b
  Laurent Modolo authored 1 year ago
  
  d5e24c1b
May 26, 2023
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · a7d32fba
  Laurent Modolo authored 1 year ago
  
  a7d32fba
- clustering.Rmd: working XY clustering · e0a32115
  Laurent Modolo authored 1 year ago
  
  e0a32115
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · d09e365a
  Laurent Modolo authored 1 year ago
  
  d09e365a
- clustering.Rmd: code to parse csv file · 1f79a60f
  Laurent Modolo authored 1 year ago
  
  1f79a60f