Commits · 73cfaf21db5b18a88631d075bcf8242a8fd45f81 · LBMC / Delattre / kmer diff

Jun 12, 2023
- fix typo for kmerclust_plot entry · 73cfaf21
  Laurent Modolo authored 1 year ago
  
  73cfaf21
- kmerclust.R: fix typo · 36fb5d2c
  Laurent Modolo authored 1 year ago
  
  36fb5d2c
- kmerclust.R: fix numeric convertion · c92da733
  Laurent Modolo authored 1 year ago
  
  c92da733
- fix args parsing in R scripts · 601b4bfb
  Laurent Modolo authored 1 year ago
  
  601b4bfb
Jun 09, 2023
- kmerclust.nf: reduce cpu · fdfd84da
  Laurent Modolo authored 1 year ago
  
  fdfd84da
- main.nf: fix typo · af3a7635
  Laurent Modolo authored 1 year ago
  
  af3a7635
- split kmerclust into multiple processes · 765b7e36
  Laurent Modolo authored 1 year ago
  
  765b7e36
- add kmerclust_plot.R · 4f33f1e3
  Laurent Modolo authored 1 year ago
  
  4f33f1e3
- split plot from the analysis · 086a8767
  Laurent Modolo authored 1 year ago
  
  086a8767
Jun 08, 2023
- update kmerclust version · 065bb98a
  Laurent Modolo authored 1 year ago
  
  065bb98a
- main.nf: fix typo · 33f33c7b
  Laurent Modolo authored 1 year ago
  
  33f33c7b
- pass params.csv as a channel to kmerclust · 5f1c445f
  Laurent Modolo authored 1 year ago
  
  5f1c445f
- add projectDir for kmerclust · 00d80ce7
  Laurent Modolo authored 1 year ago
  
  00d80ce7
- mergekmer.nf: fix typo · 30c57a00
  Laurent Modolo authored 1 year ago
  
  30c57a00
- update mergekmer.nf output to match input of kmerclust · f5bd9063
  Laurent Modolo authored 1 year ago
  
  f5bd9063
Jun 07, 2023
- add cpu args to kmerclust · fba1fce0
  Laurent Modolo authored 1 year ago
  
  fba1fce0
- kmerclust: fix process name · 1a3ed11b
  Laurent Modolo authored 1 year ago
  
  1a3ed11b
- add kmerclust module to main.nf · ed018a7e
  Laurent Modolo authored 1 year ago
  
  ed018a7e
- add kmerclust module · 1efc9788
  Laurent Modolo authored 1 year ago
  
  1efc9788
- create new repository for clustering · 13c5b824
  Laurent Modolo authored 1 year ago
  
  13c5b824
Jun 06, 2023
- clustering: add roxygen · c6daedd9
  Laurent Modolo authored 1 year ago
  
  c6daedd9
Jun 05, 2023
- clustering: add boostrap for BIC · 1f87de79
  Laurent Modolo authored 1 year ago
  
  1f87de79
- clustering: add LRT · f9cc4071
  Laurent Modolo authored 1 year ago
  
  f9cc4071
May 31, 2023
- add LTR and BIC · 13335ade
  Laurent Modolo authored 1 year ago
  
  13335ade
- add clustering XY and XO · d5e24c1b
  Laurent Modolo authored 1 year ago
  
  d5e24c1b
May 26, 2023
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · a7d32fba
  Laurent Modolo authored 1 year ago
  
  a7d32fba
- clustering.Rmd: working XY clustering · e0a32115
  Laurent Modolo authored 1 year ago
  
  e0a32115
- Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/Delattre/kmer-diff · d09e365a
  Laurent Modolo authored 1 year ago
  
  d09e365a
- clustering.Rmd: code to parse csv file · 1f79a60f
  Laurent Modolo authored 1 year ago
  
  1f79a60f
May 23, 2023
- mergekmer.nf: add kmersize in the results path · 7bd66572
  Laurent Modolo authored 1 year ago
  
  7bd66572
- change collate step to collate by species · b67793d5
  Laurent Modolo authored 1 year ago
  
  b67793d5
May 22, 2023
- add clustering.Rmd · 43dd449d
  Laurent Modolo authored 1 year ago
  
  43dd449d
May 16, 2023
- update mergekmer to v0.1.2 · e2be1c8b
  Laurent Modolo authored 1 year ago
  
  e2be1c8b
- change output name for mergekmer collate · 8b57acd8
  Laurent Modolo authored 1 year ago
  
  8b57acd8
May 12, 2023
- fix sample names in sample.csv · 33272ce7
  Laurent Modolo authored 1 year ago
  
  33272ce7
- remove COLLATEKMER2 · 239ed786
  Laurent Modolo authored 1 year ago
  
  239ed786
- update .gitignore · 06f73a5b
  Laurent Modolo authored 1 year ago
  
  06f73a5b
- add renv.lock · 941a8c43
  Laurent Modolo authored 1 year ago
  
  941a8c43
- add renv · 41ae5bf9
  Laurent Modolo authored 1 year ago
  
  41ae5bf9
- update .gitignore · bfb4d4f4
  Laurent Modolo authored 1 year ago
  
  bfb4d4f4