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Verified Commit 9697a205 authored by Laurent Modolo's avatar Laurent Modolo
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main.nf: replace kmerclust by kmerboot

parent a2fc61de
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...@@ -12,7 +12,7 @@ include { SPLIT } from "./modules/split" ...@@ -12,7 +12,7 @@ include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers" include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer" include { MERGEKMER } from "./modules/mergekmer"
include { COLLATEKMER } from "./modules/mergekmer" include { COLLATEKMER } from "./modules/mergekmer"
include { KMERCLUST_LOAD; KMERCLUST; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust" include { KMERCLUST_LOAD; KMERCLUST_BOOT; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust"
Channel.fromPath( file(params.csv) ) Channel.fromPath( file(params.csv) )
...@@ -34,7 +34,6 @@ workflow { ...@@ -34,7 +34,6 @@ workflow {
MERGEKMER(FASTKMERS.out.csv.groupTuple()) MERGEKMER(FASTKMERS.out.csv.groupTuple())
COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple()) COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple())
KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect()) KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect())
KMERCLUST(KMERCLUST_LOAD.out.rdata)
KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata)) KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata))
KMERCLUST_MERGE(KMERCLUST.out.rdata.groupTuple()) KMERCLUST_MERGE(KMERCLUST.out.rdata.groupTuple())
KMERCLUST_PLOT(KMERCLUST_MERGE.out.rdata.mix(KMERCLUST_LOAD.out.rdata).groupTuple()) KMERCLUST_PLOT(KMERCLUST_MERGE.out.rdata.mix(KMERCLUST_LOAD.out.rdata).groupTuple())
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