From 9697a205ab91f307a788caf5d0fc081f70f08444 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 3 Oct 2023 11:28:13 +0200
Subject: [PATCH] main.nf: replace kmerclust by kmerboot
---
src/main.nf | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/src/main.nf b/src/main.nf
index 9c23646..b7d961b 100644
--- a/src/main.nf
+++ b/src/main.nf
@@ -12,7 +12,7 @@ include { SPLIT } from "./modules/split"
include { FASTKMERS } from "./modules/fastkmers"
include { MERGEKMER } from "./modules/mergekmer"
include { COLLATEKMER } from "./modules/mergekmer"
-include { KMERCLUST_LOAD; KMERCLUST; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust"
+include { KMERCLUST_LOAD; KMERCLUST_BOOT; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust"
Channel.fromPath( file(params.csv) )
@@ -34,7 +34,6 @@ workflow {
MERGEKMER(FASTKMERS.out.csv.groupTuple())
COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple())
KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect())
- KMERCLUST(KMERCLUST_LOAD.out.rdata)
KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata))
KMERCLUST_MERGE(KMERCLUST.out.rdata.groupTuple())
KMERCLUST_PLOT(KMERCLUST_MERGE.out.rdata.mix(KMERCLUST_LOAD.out.rdata).groupTuple())
--
GitLab