diff --git a/src/main.nf b/src/main.nf index 9c23646ba8e53986d9bab3baa342d19f293f6331..b7d961bbe42983feaaa8509420f66f42d3a64bad 100644 --- a/src/main.nf +++ b/src/main.nf @@ -12,7 +12,7 @@ include { SPLIT } from "./modules/split" include { FASTKMERS } from "./modules/fastkmers" include { MERGEKMER } from "./modules/mergekmer" include { COLLATEKMER } from "./modules/mergekmer" -include { KMERCLUST_LOAD; KMERCLUST; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust" +include { KMERCLUST_LOAD; KMERCLUST_BOOT; KMERCLUST_PLOT; KMERCLUST_MERGE } from "./modules/kmerclust" Channel.fromPath( file(params.csv) ) @@ -34,7 +34,6 @@ workflow { MERGEKMER(FASTKMERS.out.csv.groupTuple()) COLLATEKMER(MERGEKMER.out.csv.map{it -> [it[0].specie, it[1]] }.groupTuple()) KMERCLUST_LOAD(COLLATEKMER.out.csv, params_csv.collect()) - KMERCLUST(KMERCLUST_LOAD.out.rdata) KMERCLUST_BOOT(Channel.of(1..params.bootstrap).combine(KMERCLUST_LOAD.out.rdata)) KMERCLUST_MERGE(KMERCLUST.out.rdata.groupTuple()) KMERCLUST_PLOT(KMERCLUST_MERGE.out.rdata.mix(KMERCLUST_LOAD.out.rdata).groupTuple())