Commits · 71c8b121fafc1af2e5eb36490f2a01263b40927a · Xavier Grand / bolero

Browse files

Aug 18, 2023
- Modify samtools/main.nf AS filter from 500 to 100. · 71c8b121
  Xavier Grand authored Aug 18, 2023
  
  71c8b121
Aug 17, 2023
- Add Alignment Score filtration but need to take into account the length of reads. · 372438ee
  Xavier Grand authored Aug 17, 2023
  
  372438ee
Aug 16, 2023
- Add porechop and compress all fastq files during the workflow. · eb1df0db
  Xavier Grand authored Aug 16, 2023
  
  eb1df0db
- add 390bp filtration of reads. · 29498d03
  Xavier Grand authored Aug 16, 2023
  
  29498d03
Aug 09, 2023
- Modification of JWR_checker.py of NanoSplicer tool and corresponding Dockerfile · 68fe4dca
  Xavier Grand authored Aug 9, 2023
  
  68fe4dca
Aug 03, 2023
- Add errorStrategy 'ignore' to nanosplicer process · 37436e4d
  Xavier Grand authored Aug 3, 2023
  
  37436e4d
Aug 01, 2023
- Resolution petits bugs · a59be7fa
  Xavier Grand authored Aug 1, 2023
  
  a59be7fa
Jul 26, 2023
- Nettoyage du code · ec9840f9
  aliarifki authored Jul 26, 2023
  
  ec9840f9
Jul 17, 2023
- Suppression de l'option config_file · dadbebbc
  aliarifki authored Jul 17, 2023
  
  dadbebbc
Jul 13, 2023
- Configuration file for barcoding gpu · 662bcfc8
  aliarifki authored Jul 13, 2023
  
  662bcfc8
Jul 10, 2023
- nouveaux paramètres minimap · d52844c5
  aliarifki authored Jul 10, 2023
  
  d52844c5
Jul 05, 2023
- Container pour start positoins count · cbf0b544
  aliarifki authored Jul 5, 2023
  
  cbf0b544
Jul 03, 2023
- Process quality control with bam files · c90f0965
  aliarifki authored Jul 3, 2023
  
  c90f0965
Jun 30, 2023
- Suppression du paramètre options · 291f4f6c
  aliarifki authored Jun 29, 2023
  
  291f4f6c
- Correction de bugs · 8e9aa886
  aliarifki authored Jun 29, 2023
  8e9aa886
- Transformation des fichiers de sortie de barcoding en tuple pour concatenate · b9928b0e
  aliarifki authored Jun 23, 2023
  b9928b0e
- Erreur de parenthèse · c086689b
  aliarifki authored Jun 22, 2023
  
  c086689b
- Modification du nom du process · 2ffaef30
  aliarifki authored Jun 22, 2023
  
  2ffaef30
- Correction de la fonction basecalling gpu · 51ef747b
  aliarifki authored Jun 22, 2023
  
  51ef747b
- Correction des erreurs du process barcoding · 99354655
  aliarifki authored Jun 22, 2023
  
  99354655
- Ajout ded l'option barcode aux scripts R · 43aa2ff0
  aliarifki authored Jun 22, 2023
  43aa2ff0
- Ajout du process barcoding · 12922fc2
  aliarifki authored Jun 21, 2023
  
  12922fc2
- Ajout du fichier de configuration pour bassecalling · a83c4592
  aliarifki authored Jun 20, 2023
  
  a83c4592
- Contrôle qualité et basecalling en mode gpu · 50f3b942
  aliarifki authored Jun 20, 2023
  
  50f3b942
- modification du profile pollux · 9f526a98
  aliarifki authored Jun 16, 2023
  
  9f526a98
Jun 29, 2023
- Suppression du paramètre options · 329af6e1
  aliarifki authored Jun 29, 2023
  
  329af6e1
- Correction de bugs · 6f3ae8d6
  aliarifki authored Jun 29, 2023
  
  6f3ae8d6
Jun 23, 2023
- Transformation des fichiers de sortie de barcoding en tuple pour concatenate · bd1fefeb
  aliarifki authored Jun 23, 2023
  
  bd1fefeb
Jun 22, 2023
- Erreur de parenthèse · 87fcb74d
  aliarifki authored Jun 22, 2023
  
  87fcb74d
- Modification du nom du process · 1e2cf646
  aliarifki authored Jun 22, 2023
  
  1e2cf646
- Correction de la fonction basecalling gpu · 8fc859a0
  aliarifki authored Jun 22, 2023
  
  8fc859a0
- Correction des erreurs du process barcoding · 0ee2e222
  aliarifki authored Jun 22, 2023
  
  0ee2e222
- Ajout ded l'option barcode aux scripts R · 8667704a
  aliarifki authored Jun 22, 2023
  
  8667704a
Jun 21, 2023
- Ajout du process barcoding · 622494ca
  aliarifki authored Jun 21, 2023
  
  622494ca
Jun 20, 2023
- Ajout du fichier de configuration pour bassecalling · db88907f
  aliarifki authored Jun 20, 2023
  
  db88907f
- Contrôle qualité et basecalling en mode gpu · 9ef97bea
  aliarifki authored Jun 20, 2023
  
  9ef97bea
- Neaw label to process, use of graphic cards · d82135da
  Xavier Grand authored Jun 20, 2023
  
  d82135da
Jun 16, 2023
- modification du profile pollux · 4645cdf4
  aliarifki authored Jun 16, 2023
  
  4645cdf4
Jun 15, 2023
- Ajout de la commande find pour le basecalling · 8f1a7417
  aliarifki authored Jun 15, 2023
  
  8f1a7417
Jun 14, 2023
- Ajout des barcodes · 6a48c301
  aliarifki authored Jun 14, 2023
  
  6a48c301