Skip to content
Snippets Groups Projects
Commit dadbebbc authored by aliarifki's avatar aliarifki
Browse files

Suppression de l'option config_file

parent 662bcfc8
No related branches found
No related tags found
No related merge requests found
......@@ -264,7 +264,7 @@ workflow {
//####################### PREPROCESSING #######################
/*
//Filtration (seqkit_grep looks for the 5'RACE and the gsp patterns in the reads to keep only mature ARNs)
seqkit_grep(concatenate.out.merged_fastq, params.adapt, params.gsp)
......@@ -276,7 +276,7 @@ workflow {
hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect())
sort_index_bam(hbv_genome.out.bam)
//il faut ajouter une boucle if pour le mode cpu/gpu
control_bam(ss.collect(), sort_index_bam.out.indexed_bam)
//control_bam(ss.collect(), sort_index_bam.out.indexed_bam)
//###################### START POSITIONS #######################
......@@ -300,5 +300,5 @@ workflow {
.set{files_for_rna_count}
rna_count(files_for_rna_count)
*/
}
......@@ -141,8 +141,7 @@ guppy_barcoder \
--input_path ${pass_path} \
--save_path . \
-t ${params.gpu_threads_per_caller} \
--config ${params.config_file} \
#--barcode_kits ${params.kit_barcoding} \
--barcode_kits ${params.kit_barcoding} \
--progress_stats_frequency 60 \
--enable_trim_barcodes \
--trim_adapters \
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment