diff --git a/src/bolero.nf b/src/bolero.nf index 1377805cf3f29faafbdbaa210e24183f032958fa..a2d5fdc9eec155c1178566a47f6fb60166fa8b0b 100755 --- a/src/bolero.nf +++ b/src/bolero.nf @@ -264,7 +264,7 @@ workflow { //####################### PREPROCESSING ####################### -/* + //Filtration (seqkit_grep looks for the 5'RACE and the gsp patterns in the reads to keep only mature ARNs) seqkit_grep(concatenate.out.merged_fastq, params.adapt, params.gsp) @@ -276,7 +276,7 @@ workflow { hbv_genome(cut_5pRACE.out.fastq_cutadapt, genome.collect()) sort_index_bam(hbv_genome.out.bam) //il faut ajouter une boucle if pour le mode cpu/gpu - control_bam(ss.collect(), sort_index_bam.out.indexed_bam) + //control_bam(ss.collect(), sort_index_bam.out.indexed_bam) //###################### START POSITIONS ####################### @@ -300,5 +300,5 @@ workflow { .set{files_for_rna_count} rna_count(files_for_rna_count) -*/ + } diff --git a/src/nf_modules/ont-guppy/main.nf b/src/nf_modules/ont-guppy/main.nf index 747b3b756911d9337caa96239a620e4b9523e8ef..63ab494aeb9b00eee18caaae19141619551b6625 100644 --- a/src/nf_modules/ont-guppy/main.nf +++ b/src/nf_modules/ont-guppy/main.nf @@ -141,8 +141,7 @@ guppy_barcoder \ --input_path ${pass_path} \ --save_path . \ -t ${params.gpu_threads_per_caller} \ - --config ${params.config_file} \ - #--barcode_kits ${params.kit_barcoding} \ + --barcode_kits ${params.kit_barcoding} \ --progress_stats_frequency 60 \ --enable_trim_barcodes \ --trim_adapters \