Commits · fe986dbecd202b8d21fd8e68083ebaa9bc4c7b49 · Xavier Grand / ChIPster · GitLab

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Jun 11, 2019
- fastp singularity: fix sps and pbs path · 155268f9
  Laurent Modolo authored 5 years ago
  
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  155268f9
- subread singularity: fix sps and pbs path · b3aee972
  Laurent Modolo authored 5 years ago
  
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  b3aee972
May 28, 2019
- multiqc: singularity fix env variable problem · 3c7e5740
  Laurent Modolo authored 5 years ago
  
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  3c7e5740
May 22, 2019
- singularity r: add ps to debian container · 0bb0525d
  Laurent Modolo authored 5 years ago
  
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  0bb0525d
May 21, 2019
- singularity modules: add r.3.5.3 · 8a6217da
  Laurent Modolo authored 5 years ago
  
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  8a6217da
- singularity: add ps command to debian containers · 9f50974d
  Laurent Modolo authored 5 years ago
  
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  9f50974d
May 20, 2019
- singularity modules: fix typo in .def files · f3591b54
  Laurent Modolo authored 5 years ago
  
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  f3591b54
- singularity modules: add /sps /pbs and /scratch for ccin2p3 · 9737cccf
  Laurent Modolo authored 5 years ago
  
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  9737cccf
May 15, 2019
- Urqt: fix singularity def file · c19f01b3
  Laurent Modolo authored 5 years ago
  
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  c19f01b3
May 10, 2019
- update sambamba to 0.6.9 · 3cd89d35
  Laurent Modolo authored 5 years ago
  
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  3cd89d35
Apr 16, 2019
- add .sh helpers for singularity on the ccin2p3 · 950e35f1
  Laurent Modolo authored 5 years ago
  
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  950e35f1
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
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  a972f993
Apr 12, 2019
- kallisto: add singularity script for ccin2p3 · 5f6b5a6a
  Laurent Modolo authored 5 years ago
  
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- umi_tools: add singularity module · fa64596b
  Laurent Modolo authored 5 years ago
  
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  fa64596b
- rm umitools modules to only keep umi_tools · 9fb4e109
  Laurent Modolo authored 5 years ago
  
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  9fb4e109
Apr 09, 2019
- cutadapt: add v2.1 · d280e93a
  Laurent Modolo authored 5 years ago
  
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Mar 29, 2019
- hisat2: add v2.1.0 · b150232b
  Laurent Modolo authored 6 years ago
  
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  b150232b
- hisat2: add samtools to singularity modules · e5bd9289
  Laurent Modolo authored 6 years ago
  
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  e5bd9289
Mar 28, 2019
- htseq: add v0.11.2 · ad48514d
  Laurent Modolo authored 6 years ago
  
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  ad48514d
Mar 26, 2019
- multiqc: add v1.7 · 420b7b9e
  Laurent Modolo authored 6 years ago
  
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  420b7b9e
Mar 25, 2019
- fastp: add singularity and docker files · c0582237
  Laurent Modolo authored 6 years ago
  
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  c0582237
- fix subread path ion build.sh · b7ff7a02
  Laurent Modolo authored 6 years ago
  
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  b7ff7a02
- fix subread version in path · 558d45ee
  Laurent Modolo authored 6 years ago
  
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  558d45ee
- subread: add singularity and docker files · cbf75eb1
  Laurent Modolo authored 6 years ago
  
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  cbf75eb1
Mar 22, 2019
- umitools: add docker and singularity files · edfb1092
  Laurent Modolo authored 6 years ago
  
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  edfb1092
Mar 20, 2019
- macs2: fix version number in singularity build · 6213625d
  Laurent Modolo authored 6 years ago
  
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  6213625d
- cleanup · 466efb3e
  Laurent Modolo authored 6 years ago
  
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  466efb3e
- script to help docker to singularity conversion · 71977cb5
  Laurent Modolo authored 6 years ago
  
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  71977cb5
- add singularity files for macs2 · bd597312
  Laurent Modolo authored 6 years ago
  
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  bd597312
- add singularity and docker files for macs2 · 16b188fc
  Laurent Modolo authored 6 years ago
  
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  16b188fc
Mar 07, 2019
- music: fix containers and tests · cc9f3d11
  Laurent Modolo authored 6 years ago
  
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  cc9f3d11
Mar 05, 2019
- singularity build.sh: add error catch on build · 789625d7
  Laurent Modolo authored 6 years ago
  
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  789625d7
- ucsc: add singularity files · d98673b6
  Laurent Modolo authored 6 years ago
  
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- trimmomatic: add singularity files · f645f605
  Laurent Modolo authored 6 years ago
  
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  f645f605
- tophat: add singularity files · ebf79d0c
  Laurent Modolo authored 6 years ago
  
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  ebf79d0c
Mar 04, 2019
- sratoolkit: add singularity files · 976e5e03
  Laurent Modolo authored 6 years ago
  
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  976e5e03
- samblaster: add singularity files · fe2a22eb
  Laurent Modolo authored 6 years ago
  
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  fe2a22eb
- salmon: add singularity files · 086ccdb8
  Laurent Modolo authored 6 years ago
  
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  086ccdb8
- rsem: add singularity files · 54834540
  Laurent Modolo authored 6 years ago
  
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  54834540
- pigz: add singularity files · 97f4337f
  Laurent Modolo authored 6 years ago
  
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  97f4337f