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Xavier Grand
ChIPster
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fe986dbecd202b8d21fd8e68083ebaa9bc4c7b49
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fastp: add accel_1splus protocol trimming with a switch
nf_modules: add params.<process_names> for each process
bwa: add params.bwa
fastp: add params.fastp
Merge branch 'master' into 'master'
Merge branch 'master' of gitbio.ens-lyon.fr:LBMC/nextflow
Docker: add alntools:dd96682
Docker: add emase-zero:0.3.1
Docker: add pandoc 2.11
g2gtools: fix typo :13
g2gtools: fix typo : 13
g2gtools: remove .gz from fa.gz
g2gtools: fix typo :47
g2gtools: rename fasta output to fa.gz
g2gtools: pass along tbi file
g2gtools: change output name of vcf2vci
g2gtools: fix vci_build command
samtools: fix input for multiqc process
samtools: fix output for multiqc process
samtools: add process to rename files for multiqc
nexflow.config: rm sratch config for psmn
g2gtools: simpler file_id structure
g2gtools: caputre stdout sent to stderr...
g2gtools: capture stdout sent to stderr
g2gtools: change file_id format
gatk4: fix gvcf_genotyping variable :199
gatk4: change output to avoid using file_id var as it can be a dict
minimap2: add main.nf
Docker: add minimap2:2.17
g2gtools: add convert process
bwa: add single_end mapping
add missing pairend_end & single_end switch
add paired_end and single_end switch version to all implementations
fastp: test paired_end & single_end process
bwa: fix file_id definition
bwa: fix bug :46
bwa: fix previous commit
bwa: conditional definition of the library tag
bwa: fix bam tag format
Docker: add star 2.5.3
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