Commits · c8fc7774d895944e0eaf81a241accd96d0b5679e · Xavier Grand / ChIPster · GitLab

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Nov 05, 2019
- README.md: add list of nextflow projects · c8fc7774
  Laurent Modolo authored 5 years ago
  
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- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 14be919e
  Laurent Modolo authored 5 years ago
  
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- README.md: put list of available tools in another file · fe986dbe
  Laurent Modolo authored 5 years ago
  
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- Docker: umi_tools: fix dependecies list · 1edb0ebd
  Laurent Modolo authored 5 years ago
  
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- README.md: mv getting started in a new file · 6fd6cf2f
  Laurent Modolo authored 5 years ago
  
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Oct 18, 2019
- add mail for tp · a3fd2716
  Laurent Modolo authored 5 years ago
  
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Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored 5 years ago
  
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Jun 12, 2019
- test of static website · 59dbabfe
  Laurent Modolo authored 5 years ago
  
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Jun 11, 2019
- fastp singularity: fix sps and pbs path · 155268f9
  Laurent Modolo authored 5 years ago
  
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- subread singularity: fix sps and pbs path · b3aee972
  Laurent Modolo authored 5 years ago
  
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Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
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- htseq: fix singularity config · da3831bb
  Laurent Modolo authored 5 years ago
  
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- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored 5 years ago
  
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- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
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- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
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- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
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Jun 04, 2019
- nextflow.pbs: change dag from pdf to html · b2d7e719
  Laurent Modolo authored 5 years ago
  
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- nextflow.pbs: change position of NF option to facilitate bug tracking · 787e9c42
  Laurent Modolo authored 5 years ago
  
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May 29, 2019
- Docker modules: add "ps" to debian img · b5141d92
  Laurent Modolo authored 5 years ago
  
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May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored 5 years ago
  
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- multiqc: singularity fix env variable problem · 3c7e5740
  Laurent Modolo authored 5 years ago
  
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- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored 5 years ago
  
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May 23, 2019
- CHANGELOG: add v0.3.0 · d72cbbf1
  Laurent Modolo authored 5 years ago
  
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May 22, 2019
- nextflow.pbs: give a hint that the results folder should be a parameter · bbc6d352
  Laurent Modolo authored 5 years ago
  
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- nextflow.pbs: fix pbs example · e25a64b9
  Laurent Modolo authored 5 years ago
  
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- singularity r: add ps to debian container · 0bb0525d
  Laurent Modolo authored 5 years ago
  
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- clarify example.pbs · 8d5f0314
  Laurent Modolo authored 5 years ago
  
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May 21, 2019
- singularity modules: add r.3.5.3 · 8a6217da
  Laurent Modolo authored 5 years ago
  
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- singularity: add ps command to debian containers · 9f50974d
  Laurent Modolo authored 5 years ago
  
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- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
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May 20, 2019
- singularity modules: fix typo in .def files · f3591b54
  Laurent Modolo authored 5 years ago
  
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- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
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- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
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- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
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- singularity modules: add /sps /pbs and /scratch for ccin2p3 · 9737cccf
  Laurent Modolo authored 5 years ago
  
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- in2p3 test: make singularity default for ccin2p3 · 09e2b2fc
  Laurent Modolo authored 5 years ago
  
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- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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