README.md: mv getting started in a new file

README.md

@@ -13,68 +13,7 @@ git pull upstream master
 
 These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.
 
-### Prerequisites
-
-To run nextflow on you computer you need to have java (>= 1.8) installed.
-
-```sh
-java --version
-```
-
-To be able to easily test tools already implemented for nextflow on your computer (`src/nf_modules/` to see their list). You need to have docker installed.
-
-```sh
-docker run hello-world
-```
-
-### Installing
-
-To install nextflow on you computer simply run the following command:
-
-```sh
-src/install_nextflow.sh
-```
-
-Then to initialize a given tools run the following command:
-
-```sh
-src/docker_modules/<tool_name>/<tool_version>/docker_init.sh
-```
-
-For example to initialize `file_handle` version `0.1.1`, run:
-
-```sh
-src/docker_modules/file_handle/0.1.1/docker_init.sh
-```
-
-To initialize all the tools:
-```sh
-find src/docker_modules/ -name "docker_init.sh" | awk '{system($0)}'
-```
-
-## Running the tests
-
-To run tests we first need to get a training set
-```sh
-cd data
-git clone -c http.sslVerify=false https://gitlab.biologie.ens-lyon.fr/LBMC/tiny_dataset.git
-cp tiny_dataset/fastq/tiny_R1.fastq tiny_dataset/fastq/tiny2_R1.fastq
-cp tiny_dataset/fastq/tiny_R2.fastq tiny_dataset/fastq/tiny2_R2.fastq
-cp tiny_dataset/fastq/tiny_S.fastq tiny_dataset/fastq/tiny2_S.fastq
-cd ..
-```
-
-Then to run the tests for a given tools run the following command:
-
-```sh
-src/nf_modules/<tool_name>/<tool_version>/tests.sh
-```
-
-For example to run the tests on `Bowtie2` run:
-
-```sh
-src/nf_modules/bowtie2/tests.sh
-```
+[you can follow them here.](doc/getting_started.md)
 
 ## Available tools
 

doc/getting_started.md

+## Getting Started
+
+These instructions will get you a copy of the project up and running on your local machine for development and testing purposes. See deployment for notes on how to deploy the project on a live system.
+
+### Prerequisites
+
+To run nextflow on you computer you need to have java (>= 1.8) installed.
+
+```sh
+java --version
+```
+
+To be able to easily test tools already implemented for nextflow on your computer (`src/nf_modules/` to see their list). You need to have docker installed.
+
+```sh
+docker run hello-world
+```
+
+### Installing
+
+To install nextflow on you computer simply run the following command:
+
+```sh
+src/install_nextflow.sh
+```
+
+Then to initialize a given tools run the following command:
+
+```sh
+src/docker_modules/<tool_name>/<tool_version>/docker_init.sh
+```
+
+For example to initialize `file_handle` version `0.1.1`, run:
+
+```sh
+src/docker_modules/file_handle/0.1.1/docker_init.sh
+```
+
+To initialize all the tools:
+```sh
+find src/docker_modules/ -name "docker_init.sh" | awk '{system($0)}'
+```
+
+## Running the tests
+
+To run tests we first need to get a training set
+```sh
+cd data
+git clone -c http.sslVerify=false https://gitlab.biologie.ens-lyon.fr/LBMC/tiny_dataset.git
+cp tiny_dataset/fastq/tiny_R1.fastq tiny_dataset/fastq/tiny2_R1.fastq
+cp tiny_dataset/fastq/tiny_R2.fastq tiny_dataset/fastq/tiny2_R2.fastq
+cp tiny_dataset/fastq/tiny_S.fastq tiny_dataset/fastq/tiny2_S.fastq
+cd ..
+```
+
+Then to run the tests for a given tools run the following command:
+
+```sh
+src/nf_modules/<tool_name>/<tool_version>/tests.sh
+```
+
+For example to run the tests on `Bowtie2` run:
+
+```sh
+src/nf_modules/bowtie2/tests.sh
+```