Commits · b905d301853174e240831f0d639a81eed84e2ac8 · Xavier Grand / ChIPster · GitLab

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Nov 27, 2019
- .update_config.sh: exclude nf module from singularity update · b905d301
  Laurent Modolo authored 5 years ago
  
  b905d301
- add .signularity_in2p3 folder to fix lock problem in nf · 32312418
  Laurent Modolo authored 5 years ago
  
  32312418
- add .signularity_in2p3 folder to fix lock problem in nf · 3192a86d
  Laurent Modolo authored 5 years ago
  
  3192a86d
- Merge branch 'master' into dev · f5642ccc
  Laurent Modolo authored 5 years ago
  
  f5642ccc
Nov 22, 2019
- psmn: test of new symlink structure for conda env · 3a681558
  Laurent Modolo authored 5 years ago
  
  3a681558
- psmn: add ribotish_0.2.4 · ea7618fc
  Laurent Modolo authored 5 years ago
  
  ea7618fc
- src/ cleanup .pbs example · 94a24ded
  Laurent Modolo authored 5 years ago
  
  94a24ded
Nov 20, 2019
- docker: fix ucsc img · 2835b4b2
  Laurent Modolo authored 5 years ago
  
  2835b4b2
- psmn: add axtchain_377 · a555e942
  Laurent Modolo authored 5 years ago
  
  a555e942
- psmn: add liftover_357 · 5615c454
  Laurent Modolo authored 5 years ago
  
  5615c454
- singularity: remove module as they are pulled from docker since 0.4.0 · e4c29f64
  Laurent Modolo authored 5 years ago
  
  e4c29f64
- docker: add liftover:357 · 4184614b
  Laurent Modolo authored 5 years ago
  
  4184614b
- docker: change FROM url to add lbmc/ prefix · aa85921f
  Laurent Modolo authored 5 years ago
  
  aa85921f
- docker: change FROM url to add lbmc/ prefix · 81768be1
  Laurent Modolo authored 5 years ago
  
  81768be1
- update docker script for v0.4.0 to automatise push · 7064340c
  Laurent Modolo authored 5 years ago
  
  7064340c
- update docker script for v0.4.0 · 28cb6941
  Laurent Modolo authored 5 years ago
  
  28cb6941
- docker_files: fix sambamba · c2fad6c0
  Laurent Modolo authored 5 years ago
  
  c2fad6c0
- README.md: increave visibility for 0.4.0 transition · d0eb0a93
  Laurent Modolo authored 5 years ago
  
  d0eb0a93
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored 5 years ago
  
  4ff7d565
- update docker script for v0.4.0 · a037caea
  Laurent Modolo authored 5 years ago
  
  a037caea
- docker_files: add star · b6f00cb0
  Laurent Modolo authored 5 years ago
  
  b6f00cb0
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
- add update_config.sh file to update to the last config version · d31c7df7
  Laurent Modolo authored 5 years ago
  
  d31c7df7
- conda_packages.sh: fix CONDA_ENVS var · fb134b73
  Laurent Modolo authored 5 years ago
  
  fb134b73
- conda_packages.sh: add CONDA_ENVS def · a42d5481
  Laurent Modolo authored 5 years ago
  
  a42d5481
- .conda_packages.sh: fix conda init link · e409840a
  Laurent Modolo authored 5 years ago
  
  e409840a
- conda: add start 2.7.3a · 4ef4b150
  Laurent Modolo authored 5 years ago
  
  4ef4b150
Nov 13, 2019
- nf_modules: rm ccin2p3_conda section in config files · cbe80128
  Laurent Modolo authored 5 years ago
  
  cbe80128
Nov 06, 2019
- nf_modules: bowtie fixe conda path · 9ec1ade8
  Laurent Modolo authored 5 years ago
  
  9ec1ade8
- conda_psmn: fix path of the scripts in configs files · b43a5a48
  Laurent Modolo authored 5 years ago
  
  b43a5a48
- conda_psmn.sh: hide file · 6f8ae0a0
  Laurent Modolo authored 5 years ago
  
  6f8ae0a0
- training_dataset.config: fix psmn path · e55b6d4f
  Laurent Modolo authored 5 years ago
  
  e55b6d4f
- training_dataset.config: update conda_psmn.sh path to use $workflow · d5e47faa
  Laurent Modolo authored 5 years ago
  
  d5e47faa
- training_dataset.config: update conda path to use .conda_envs link · e18e8c9c
  Laurent Modolo authored 5 years ago
  
  e18e8c9c
- psmn: add symlink to conda envs · 1b8d5db5
  Laurent Modolo authored 5 years ago
  
  1b8d5db5
- training_dataset.config: update CONDA_ENVS · beac4302
  Laurent Modolo authored 5 years ago
  
  beac4302
- training_dataset.config: update config to match latest changes · ffb23d50
  Laurent Modolo authored 5 years ago
  
  ffb23d50
- hide src/* files not necessary for users · 3efd91bd
  Laurent Modolo authored 5 years ago
  
  3efd91bd
- rename Kallisto_index.pbs to have more explicite name · 3d9436a7
  Laurent Modolo authored 5 years ago
  
  3d9436a7
- PSMN: add install script for conda modules · 83c22dca
  Laurent Modolo authored 5 years ago
  
  83c22dca