Commits · 99eb87053a5094715087fd396dd355794cd23fe0 · Xavier Grand / ChIPster

May 07, 2019
- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
  99eb8705
- nextflow.pbs: working qsub for ccin2p3 · 3650829c
  Laurent Modolo authored 5 years ago
  
  3650829c
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 5 years ago
  
  3da0a73c
- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 5 years ago
  
  2547f52d
May 02, 2019
- nextflow.pbs: add correct fasta path · cee29ee2
  Laurent Modolo authored 5 years ago
  
  cee29ee2
- nextflow.pbs: change NF parameters order · c09d0f5c
  Laurent Modolo authored 5 years ago
  
  c09d0f5c
- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
  bf418ede
- nextflow.pbs: fix logs path · d8bde481
  Laurent Modolo authored 5 years ago
  
  d8bde481
- nextflow.pbs: add context demon · abdea03a
  Laurent Modolo authored 5 years ago
  
  abdea03a
Apr 17, 2019
- add pbs script for in2p3 · ca5b834f
  Laurent Modolo authored 5 years ago
  
  ca5b834f
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 5 years ago
  
  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 5 years ago
  
  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 5 years ago
  
  aa5dbf3d
- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 5 years ago
  
  e069611c
- urqt: add in2p3 config · 950bd41f
  Laurent Modolo authored 5 years ago
  
  950bd41f
- sratoolkit: add in2p3 config · e336cd2a
  Laurent Modolo authored 5 years ago
  
  e336cd2a
- samtools: add in2p3 config · 9d8b2010
  Laurent Modolo authored 5 years ago
  
  9d8b2010
- samblaster: add in2p3 config · 7505299c
  Laurent Modolo authored 5 years ago
  
  7505299c
- sambamba: add in2p3 config · a0f7c6dc
  Laurent Modolo authored 5 years ago
  
  a0f7c6dc
- rsem: add in2p3 config · cae8221a
  Laurent Modolo authored 5 years ago
  
  cae8221a
- music: add in2p3 config · 520f4e9f
  Laurent Modolo authored 5 years ago
  
  520f4e9f
- multiqc: add in2p3 config · f60953e1
  Laurent Modolo authored 5 years ago
  
  f60953e1
- macs2: add in2p3 config # Please enter the commit message for your changes. Lines starting · abd775c2
  Laurent Modolo authored 5 years ago
  
  abd775c2
- htseq: add in2p3 config · 7e5b25f3
  Laurent Modolo authored 5 years ago
  
  7e5b25f3
- hisat2: add in2p3 config · eeac2fbf
  Laurent Modolo authored 5 years ago
  
  eeac2fbf
- fastqc: add in2p3 config · fecdfd5a
  Laurent Modolo authored 5 years ago
  
  fecdfd5a
- fastp: add in2p3 config · f3d19ff9
  Laurent Modolo authored 5 years ago
  
  f3d19ff9
- deeptools: add in2p3 config · 1e4f4848
  Laurent Modolo authored 5 years ago
  
  1e4f4848
- cutadapt: add in2p3 config · e573e51f
  Laurent Modolo authored 5 years ago
  
  e573e51f
- bwa: add in2p3 config · 9aa69834
  Laurent Modolo authored 5 years ago
  
  9aa69834
- bowtie2: add in2p3 config · 5b50ecea
  Laurent Modolo authored 5 years ago
  
  5b50ecea
- bowtie: add in2p3 config · 7fc46b3c
  Laurent Modolo authored 5 years ago
  
  7fc46b3c
- bedtools: update in2p3 config · a567c6aa
  Laurent Modolo authored 5 years ago
  
  a567c6aa
- kallisto: add in2p3 config · e16a1a9f
  Laurent Modolo authored 5 years ago
  
  e16a1a9f
- add .sh helpers for singularity on the ccin2p3 · 950e35f1
  Laurent Modolo authored 5 years ago
  
  950e35f1
- change .sif to .img for singularity img · a972f993
  Laurent Modolo authored 5 years ago
  
  a972f993
Apr 12, 2019
- kallisto: fix singularity tests · 70dc013f
  Laurent Modolo authored 5 years ago
  
  70dc013f
- kallisto: config for in2p3, add /usr/bin to path · e636850a
  Laurent Modolo authored 5 years ago
  
  e636850a
- kallisto: add verbose to indexing.nf · 5aaa2669
  Laurent Modolo authored 5 years ago
  
  5aaa2669
- kallisto: remove bash config · 5fca29e5
  Laurent Modolo authored 5 years ago
  
  5fca29e5