deeptools: add in2p3 config

src/nf_modules/deeptools/bam_to_bigwig.config

@@ -52,4 +52,32 @@ profiles {
       }
     }
   }
+  ccin2p3 {
+    process{
+      withName: index_bam {
+        beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/sambamba/0.6.7/:/usr/bin:$PATH"
+        scratch = true
+        stageInMode = "copy"
+        stageOutMode = "rsync"
+        executor = "sge"
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+        cpus = 1
+        memory = "10GB"
+        time = "24h"
+      }
+    }
+    process{
+      withName: bam_to_bigwig {
+        beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH"
+        scratch = true
+        stageInMode = "copy"
+        stageOutMode = "rsync"
+        executor = "sge"
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+        cpus = 1
+        memory = "10GB"
+        time = "24h"
+      }
+    }
+  }
 }

src/nf_modules/deeptools/compute_matrix.config

@@ -33,4 +33,19 @@ profiles {
       }
     }
   }
+  ccin2p3 {
+    process{
+      withName: compute_matrix {
+        beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH"
+        scratch = true
+        stageInMode = "copy"
+        stageOutMode = "rsync"
+        executor = "sge"
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+        cpus = 1
+        memory = "10GB"
+        time = "24h"
+      }
+    }
+  }
 }

src/nf_modules/deeptools/plot_profile.config

@@ -33,4 +33,19 @@ profiles {
       }
     }
   }
+  ccin2p3 {
+    process{
+      withName: plot_profile {
+        beforeScript = "PATH=/sps/lbmc/common/nextflow/src/singularity_modules/deeptools/3.0.2/:/usr/bin:$PATH"
+        scratch = true
+        stageInMode = "copy"
+        stageOutMode = "rsync"
+        executor = "sge"
+        clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n"
+        cpus = 1
+        memory = "10GB"
+        time = "24h"
+      }
+    }
+  }
 }