Commits · 883c3c3ebe3c97d122e7564992318c606f6975fd · Xavier Grand / ChIPster · GitLab

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May 20, 2019
- in2p3 test: change pos of --bind option for singularity... · 883c3c3e
  Laurent Modolo authored 5 years ago
  
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  883c3c3e
- in2p3 test: add singularity bind option · 0f3a7c43
  Laurent Modolo authored 5 years ago
  
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  0f3a7c43
- in2p3 test: fix beforeScript config · f6921da8
  Laurent Modolo authored 5 years ago
  
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- in2p3: test singylarity mount bind config · b6101c65
  Laurent Modolo authored 5 years ago
  
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- in2p3: test singularity automount · 854a1709
  Laurent Modolo authored 5 years ago
  
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- in2p3 singularity: fix logs path · 9e61e551
  Laurent Modolo authored 5 years ago
  
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  9e61e551
- test in2p3: add more details in mail report · b7d9581d
  Laurent Modolo authored 5 years ago
  
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- kallisto_index.php: fix fasta path · 00019115
  Laurent Modolo authored 5 years ago
  
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- kallisto_index.pbs: update pbs · 2568b430
  Laurent Modolo authored 5 years ago
  
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- update kalliso pbs for in2p3 test · 99dec62b
  Laurent Modolo authored 5 years ago
  
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  99dec62b
- singularity test at in2p3 · 803af8b7
  Laurent Modolo authored 5 years ago
  
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May 17, 2019
- config files: updater monocore queues for psmn · 21a8f8b8
  Laurent Modolo authored 5 years ago
  
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May 16, 2019
- R: dockerfile add make dependencies and git · 8bcae2bf
  Laurent Modolo authored 5 years ago
  
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May 15, 2019
- Urqt: fix singularity def file · c19f01b3
  Laurent Modolo authored 5 years ago
  
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- improve comment of nextflow.pbs · 80a16578
  Laurent Modolo authored 5 years ago
  
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- update condata package list · 0383fbc4
  Laurent Modolo authored 5 years ago
  
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- fix ccin2p3 profile for loading miniconda3 · 565ffad2
  Laurent Modolo authored 5 years ago
  
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  565ffad2
May 14, 2019
- conda_packages.sh: add r3.5.1 · 8b4dbd24
  Laurent Modolo authored 5 years ago
  
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  8b4dbd24
May 10, 2019
- update sambamba to 0.6.9 · 3cd89d35
  Laurent Modolo authored 5 years ago
  
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  3cd89d35
- src/conda_packages.sh: add python3.7 · dc613795
  Laurent Modolo authored 5 years ago
  
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May 09, 2019
- conda_packages.sh: fix conda install cmd · 68862d6a
  Laurent Modolo authored 5 years ago
  
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- conda_packages.sh: fix install_env function · 69ac9343
  Laurent Modolo authored 5 years ago
  
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- conda_packages.sh: add R and python env · e86790b7
  Laurent Modolo authored 5 years ago
  
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- Merge branch 'rseraphi/nextflow-master' · 571b04cd
  Laurent Modolo authored 5 years ago
  
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  571b04cd
May 07, 2019
- docker r et python · ab070a70
  rseraph authored 5 years ago
  
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- conda_packages.sh: add script to install conda packages for nf · 7dfbc487
  Laurent Modolo authored 5 years ago
  
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- nf_modules: update ccin2p3 config · 99eb8705
  Laurent Modolo authored 5 years ago
  
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  99eb8705
- nextflow.pbs: working qsub for ccin2p3 · 3650829c
  Laurent Modolo authored 5 years ago
  
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  3650829c
May 03, 2019
- kallisto: indexing config sh conda env instead of source · 3da0a73c
  Laurent Modolo authored 5 years ago
  
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- kallisto: indexing config add error log for in2p3 · 2547f52d
  Laurent Modolo authored 5 years ago
  
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May 02, 2019
- nextflow.pbs: add correct fasta path · cee29ee2
  Laurent Modolo authored 5 years ago
  
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- nextflow.pbs: change NF parameters order · c09d0f5c
  Laurent Modolo authored 5 years ago
  
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- nextflow: update in2p3 test for demon queue · bf418ede
  Laurent Modolo authored 5 years ago
  
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- nextflow.pbs: fix logs path · d8bde481
  Laurent Modolo authored 5 years ago
  
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- nextflow.pbs: add context demon · abdea03a
  Laurent Modolo authored 5 years ago
  
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Apr 17, 2019
- add pbs script for in2p3 · ca5b834f
  Laurent Modolo authored 5 years ago
  
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  ca5b834f
Apr 16, 2019
- kallisto: try to remove option for in2p3 qsub · 6a9d1f73
  Laurent Modolo authored 5 years ago
  
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  6a9d1f73
- kallisto: index.config test mc_huge for indexing · 3cb0f062
  Laurent Modolo authored 5 years ago
  
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  3cb0f062
- kallisto: indexing.config add queue for in2p3 · aa5dbf3d
  Laurent Modolo authored 5 years ago
  
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- kallisto: add ccin2p3_conda profile for indexing · e069611c
  Laurent Modolo authored 5 years ago
  
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  e069611c