Commits · 4ff7d5659f7ec1d955ec88b69bcbbdcea3f5d7d6 · Xavier Grand / ChIPster · GitLab

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Nov 20, 2019
- nf_modules: add STAR · 4ff7d565
  Laurent Modolo authored 5 years ago
  
  4ff7d565
- update docker script for v0.4.0 · a037caea
  Laurent Modolo authored 5 years ago
  
  a037caea
- docker_files: add star · b6f00cb0
  Laurent Modolo authored 5 years ago
  
  b6f00cb0
Nov 18, 2019
- version 0.4.0 · 4734f32a
  Laurent Modolo authored 5 years ago
  
  4734f32a
Nov 05, 2019
- README.md: update list of projects · c771caa4
  Laurent Modolo authored 5 years ago
  
  v0.4.0
  
  c771caa4
- README.md: add list of nextflow projects · c8fc7774
  Laurent Modolo authored 5 years ago
  
  c8fc7774
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 14be919e
  Laurent Modolo authored 5 years ago
  
  14be919e
- README.md: put list of available tools in another file · fe986dbe
  Laurent Modolo authored 5 years ago
  
  fe986dbe
- Docker: umi_tools: fix dependecies list · 1edb0ebd
  Laurent Modolo authored 5 years ago
  
  1edb0ebd
- README.md: mv getting started in a new file · 6fd6cf2f
  Laurent Modolo authored 5 years ago
  
  6fd6cf2f
Oct 18, 2019
- add mail for tp · a3fd2716
  Laurent Modolo authored 5 years ago
  
  a3fd2716
Jul 18, 2019
- fastqdump.nf: force tmp file to be in the right place · 01dac1f9
  Laurent Modolo authored 5 years ago
  
  01dac1f9
Jun 12, 2019
- test of static website · 59dbabfe
  Laurent Modolo authored 5 years ago
  
  59dbabfe
Jun 11, 2019
- fastp singularity: fix sps and pbs path · 155268f9
  Laurent Modolo authored 5 years ago
  
  155268f9
- subread singularity: fix sps and pbs path · b3aee972
  Laurent Modolo authored 5 years ago
  
  b3aee972
Jun 07, 2019
- bowtie nf: change report max size from 15 line to 19 · 78cf7e3c
  Laurent Modolo authored 5 years ago
  
  78cf7e3c
- htseq: fix singularity config · da3831bb
  Laurent Modolo authored 5 years ago
  
  da3831bb
- subread nf: add nf config and test files · f92cde7c
  Laurent Modolo authored 5 years ago
  
  f92cde7c
- bowtie: nf fix pair_id var call · 44e1391d
  Laurent Modolo authored 5 years ago
  
  44e1391d
- bowtie: nf, only keep 15 last lines of report · 92f8f605
  Laurent Modolo authored 5 years ago
  
  92f8f605
- bowtie2: nf, only keep last 15 lines of report · 0977ef07
  Laurent Modolo authored 5 years ago
  
  0977ef07
Jun 04, 2019
- nextflow.pbs: change dag from pdf to html · b2d7e719
  Laurent Modolo authored 5 years ago
  
  b2d7e719
- nextflow.pbs: change position of NF option to facilitate bug tracking · 787e9c42
  Laurent Modolo authored 5 years ago
  
  787e9c42
May 29, 2019
- Docker modules: add "ps" to debian img · b5141d92
  Laurent Modolo authored 5 years ago
  
  b5141d92
May 28, 2019
- fastqdump: fix singularity image name · e491cdc7
  Laurent Modolo authored 5 years ago
  
  e491cdc7
- multiqc: singularity fix env variable problem · 3c7e5740
  Laurent Modolo authored 5 years ago
  
  3c7e5740
- multiqc: add missing singulairy test · 6a330a3a
  Laurent Modolo authored 5 years ago
  
  6a330a3a
May 23, 2019
- CHANGELOG: add v0.3.0 · d72cbbf1
  Laurent Modolo authored 5 years ago
  
  d72cbbf1
May 22, 2019
- nextflow.pbs: give a hint that the results folder should be a parameter · bbc6d352
  Laurent Modolo authored 5 years ago
  
  of the pipe
  v0.3.0
  
  bbc6d352
- nextflow.pbs: fix pbs example · e25a64b9
  Laurent Modolo authored 5 years ago
  
  e25a64b9
- singularity r: add ps to debian container · 0bb0525d
  Laurent Modolo authored 5 years ago
  
  0bb0525d
- clarify example.pbs · 8d5f0314
  Laurent Modolo authored 5 years ago
  
  8d5f0314
May 21, 2019
- singularity modules: add r.3.5.3 · 8a6217da
  Laurent Modolo authored 5 years ago
  
  8a6217da
- singularity: add ps command to debian containers · 9f50974d
  Laurent Modolo authored 5 years ago
  
  9f50974d
- nf modules singularity: remove logs for in2p3 · f8fe5b84
  Laurent Modolo authored 5 years ago
  
  f8fe5b84
May 20, 2019
- singularity modules: fix typo in .def files · f3591b54
  Laurent Modolo authored 5 years ago
  
  f3591b54
- nf modules: adapt ccin2p3 profile to use singularity · 6cccaa96
  Laurent Modolo authored 5 years ago
  
  6cccaa96
- nf modules: add ccin2p3 profile · e170dad3
  Laurent Modolo authored 5 years ago
  
  e170dad3
- nf module: ccin2p3 profile become cc2inp3_conda · 78189351
  Laurent Modolo authored 5 years ago
  
  78189351
- singularity modules: add /sps /pbs and /scratch for ccin2p3 · 9737cccf
  Laurent Modolo authored 5 years ago
  
  9737cccf