Commits · 3dd05762d8cdf8875b80f2a09853dfc9960c3c22 · Xavier Grand / ChIPster

May 20, 2021
- gffread: add main.nf · 3dd05762
  Laurent Modolo authored 3 years ago
  
  3dd05762
- gffread: add version 0.12.2 · 9eb61947
  Laurent Modolo authored 3 years ago
  
  9eb61947
May 18, 2021
- kb: change t2g.py to use classical transcript and gene gtf format · bd5b4ace
  Laurent Modolo authored 3 years ago
  
  bd5b4ace
- bowtie2: change file_id handling · 192fef09
  Laurent Modolo authored 3 years ago
  
  192fef09
May 17, 2021
- kb: fix missing \ at end of lines · 5a367584
  Laurent Modolo authored 3 years ago
  
  5a367584
May 12, 2021
- kb: fix t2g.py to have first transcript and then gene · fdb6eac6
  Laurent Modolo authored 3 years ago
  
  fdb6eac6
May 11, 2021
- cutadapt: update output name and capture · cb215113
  Laurent Modolo authored 3 years ago
  
  cb215113
- cutadapt: update to last contributing guide version · 5af36606
  Laurent Modolo authored 3 years ago
  
  5af36606
May 10, 2021
- alntools: try fix for bam bai · 451c10bb
  Laurent Modolo authored 3 years ago
  
  451c10bb
May 07, 2021
- kb: remove view() · 972e601e
  Laurent Modolo authored 3 years ago
  
  972e601e
- flexi_splitter: split computation per plate · 1852fe84
  Laurent Modolo authored 3 years ago
  
  1852fe84
- flexi_splitter: fix tag :25 · 1d80497e
  Laurent Modolo authored 3 years ago
  
  1d80497e
- flexi_splitter: fixed group_fastq process · b92686a4
  Laurent Modolo authored 3 years ago
  
  b92686a4
May 06, 2021
- alntools: remove chunck option · 6cc2e1a8
  Laurent Modolo authored 3 years ago
  
  6cc2e1a8
- emase-zero: change bam to bam_idx · 833c88f7
  Laurent Modolo authored 3 years ago
  
  833c88f7
- nf_modules: add beagle · 7dbcab2b
  Laurent Modolo authored 3 years ago
  
  7dbcab2b
- alntools: change input to bam to indexed bam · 7212d7bc
  Laurent Modolo authored 3 years ago
  
  7212d7bc
- alntools: add six module · 03d1b183
  Laurent Modolo authored 3 years ago
  
  03d1b183
- flexi_splitter: double escape sed cmd · 7632aaf5
  Laurent Modolo authored 3 years ago
  
  7632aaf5
- flexi_splitter: double escape sed cmd · c4c0f64a
  Laurent Modolo authored 3 years ago
  
  c4c0f64a
May 05, 2021
- alntools: add gawk to docker · 778f3cdc
  Laurent Modolo authored 3 years ago
  
  778f3cdc
- alntools: double escape awk script · acb3143c
  Laurent Modolo authored 3 years ago
  
  acb3143c
- nf_modules: update alntools awk · f2f617c5
  Laurent Modolo authored 3 years ago
  
  f2f617c5
- alntools: update params names · d2c5476d
  Laurent Modolo authored 3 years ago
  
  d2c5476d
- alntools: update transcript lengths computation · e54720be
  Laurent Modolo authored 3 years ago
  
  e54720be
- alntools: fix docker version · f38f822f
  Laurent Modolo authored 3 years ago
  
  f38f822f
- flexi_splitter: fix awk cmd · f089ea6b
  Laurent Modolo authored 3 years ago
  
  f089ea6b
- kb: remove collect() call · ef62cf28
  Laurent Modolo authored 3 years ago
  
  ef62cf28
- emase-zero: change gtf to bam cardinality to 1 to 1 · 7ccc789d
  Laurent Modolo authored 3 years ago
  
  7ccc789d
May 03, 2021
- flexi_splitter: fix awk cmd · 1ef49919
  Laurent Modolo authored 3 years ago
  
  1ef49919
- flexi_splitter: fix code duplication · 447d8399
  Laurent Modolo authored 3 years ago
  
  447d8399
- flexi_splitter: reformat output file to avoid file name conflict · e5a500da
  Laurent Modolo authored 3 years ago
  
  e5a500da
- bwa: fix index names in mapping · 86b3d5ab
  Laurent Modolo authored 3 years ago
  
  86b3d5ab
Apr 29, 2021
- flexi_splitter: fix paired-end input :33 · 9bb0eb38
  Laurent Modolo authored 3 years ago
  
  9bb0eb38
- flexi_splitter: try to fix bug · 329e2300
  Laurent Modolo authored 3 years ago
  
  329e2300
- flexi_splitter: fix var name :33 · d00b6bbe
  Laurent Modolo authored 3 years ago
  
  d00b6bbe
- flexi_splitter: remove unnessary lines · f21fa8c5
  Laurent Modolo authored 3 years ago
  
  f21fa8c5
- bwa: update index name · 7b94a507
  Laurent Modolo authored 3 years ago
  
  7b94a507
- kb: add -m option to control memory · 260389ed
  Laurent Modolo authored 3 years ago
  
  260389ed
- bwa: fix index variable · 3cfd27b2
  Laurent Modolo authored 3 years ago
  
  3cfd27b2