Commits · 3d72cecb3e210a3758da4c3f18765751bd9e33f9 · Xavier Grand / ChIPster · GitLab

Snippets Groups Projects

Apr 20, 2021
- README.md: add link to building_your_pipeline.md · 3d72cecb
  Laurent Modolo authored 3 years ago
  
  3d72cecb
- getting_started.md: add ccin2p3 section · 8e4ddf6a
  Laurent Modolo authored 3 years ago
  
  8e4ddf6a
- CONTRIBUTING.md: fix img path · 7405fcaa
  Laurent Modolo authored 3 years ago
  
  7405fcaa
- *.md: fix img path · 5961ee82
  Laurent Modolo authored 3 years ago
  
  5961ee82
- CONTRIBUTING.md: fix merge request img path · f0eec78e
  Laurent Modolo authored 3 years ago
  
  f0eec78e
Apr 19, 2021
- multiqc: set QC as default out folder · 149a3eab
  Laurent Modolo authored 3 years ago
  
  149a3eab
- fastp: fix json output file · ec397a7f
  Laurent Modolo authored 3 years ago
  
  ec397a7f
Apr 16, 2021
- gatk3: fix high_confidence_snp_filter call · df5c19a1
  Laurent Modolo authored 3 years ago
  
  df5c19a1
- fix typo in building_your_pipeline.md · c8c10187
  Laurent Modolo authored 3 years ago
  
  c8c10187
- minimap2: fix single-end handling · a433d102
  Laurent Modolo authored 3 years ago
  
  a433d102
- update guide to build pipeline · e90c027d
  Laurent Modolo authored 3 years ago
  
  e90c027d
- kallisto: fix output capture · 91ec481f
  Laurent Modolo authored 3 years ago
  
  91ec481f
- nf_modules: fix paired-single end handling · 481dc0d4
  Laurent Modolo authored 3 years ago
  
  481dc0d4
- add build_your_pipeline.md: with the 2 first steps of the guide · f7918c2d
  Laurent Modolo authored 3 years ago
  
  f7918c2d
- README.md: add last update section · 32b6eef7
  Laurent Modolo authored 3 years ago
  
  32b6eef7
- CONTRIBUTING.md: add Forking definition · 36aacef9
  Laurent Modolo authored 3 years ago
  
  36aacef9
- getting_started.md: add link to building your pipeline guide · 51a1d4dc
  Laurent Modolo authored 3 years ago
  
  51a1d4dc
- CONTRIBUTING.md: fix typo · 3907181b
  Laurent Modolo authored 3 years ago
  
  3907181b
- CONTRIBUTING.md: add complex processes step · b927e7f7
  Laurent Modolo authored 3 years ago
  
  b927e7f7
Apr 15, 2021
- Merge remote-tracking branch 'origin/master' · 1fed060f
  Laurent Modolo authored 3 years ago
  
  1fed060f
- CONTRIBUTING.md: fix typo · 46bc2524
  Laurent Modolo authored 3 years ago
  
  46bc2524
- CONTRIBUTING.md: complet Docker part · 231548b1
  Laurent Modolo authored 3 years ago
  
  231548b1
- fastp: fix accel_s1plus protocol · 8e1543d2
  Laurent Modolo authored 3 years ago
  
  8e1543d2
- nextflow.config: change singualrity cacheDir for profile psmn · a7b03ba6
  Laurent Modolo authored 3 years ago
  
  a7b03ba6
- bwa: fix variable name :46 · bca33ec1
  Laurent Modolo authored 3 years ago
  
  bca33ec1
- bwa: add missing { :52 · 41ae8c2e
  Laurent Modolo authored 3 years ago
  
  41ae8c2e
- bwa: test if file_id is Map · c6be6b39
  Laurent Modolo authored 3 years ago
  
  c6be6b39
- bwa: new change and library def · 34b4db9d
  Laurent Modolo authored 3 years ago
  
  34b4db9d
- bwa: fix missing } :52 · fe818588
  Laurent Modolo authored 3 years ago
  
  fe818588
- bwa: handle dict as file_id for mapping_fastq · 1de16f9a
  Laurent Modolo authored 3 years ago
  
  1de16f9a
- bowtie2: fix missing variable :49 · b5b2bda7
  Laurent Modolo authored 3 years ago
  
  b5b2bda7
- bwa: change index and fastq order for mapping · e3de37bc
  Laurent Modolo authored 3 years ago
  
  e3de37bc
- picard: add publishDir option · f5691c89
  Laurent Modolo authored 3 years ago
  
  f5691c89
- bwa: fix library variable definition · e13bd1eb
  Laurent Modolo authored 3 years ago
  
  e13bd1eb
- bwa: fix typo in index_fasta · edd36c5b
  Laurent Modolo authored 3 years ago
  
  edd36c5b
- samtools: update publishDir directives · c6944a8e
  Laurent Modolo authored 3 years ago
  
  c6944a8e
- nf_modules: fix bug in variable names for samtools and bwa · c75f1dda
  Laurent Modolo authored 3 years ago
  
  c75f1dda
- nf_modules: update last main.nf to change in CONTRIBUTING.md · fdb5acb8
  Laurent Modolo authored 3 years ago
  
  fdb5acb8
Apr 14, 2021
- CONTRIBUTING.md: add info on channel creation · dbbbac30
  Laurent Modolo authored 3 years ago
  
  dbbbac30
- bwa: update to match CONTRIBUTING.md · c6dce992
  Laurent Modolo authored 3 years ago
  
  c6dce992