Commits · 2150d981381435d302da8ccce1fc8b9b2105c0ab · Xavier Grand / ChIPster

Jun 04, 2021
- cleanup DSL1 test.sh · 2150d981
  Laurent Modolo authored 3 years ago
  
  2150d981
- switcth to nextflow DSL2 · cc2d49f6
  Laurent Modolo authored 3 years ago
  
  cc2d49f6
Jun 02, 2021
- Docker: add emase 0.10.16 · 6614fc01
  Laurent Modolo authored 3 years ago
  
  v2.0.0
  
  6614fc01
- example_marseq.nf: add log for config file · 99c06a7a
  Laurent Modolo authored 3 years ago
  
  99c06a7a
- example_marseq.nf: add vecloty example · 36dac5e3
  Laurent Modolo authored 3 years ago
  
  36dac5e3
- kb: add velocity workflow · 753be570
  Laurent Modolo authored 3 years ago
  
  753be570
- example_variant_calling.nf: fix fasta var · c8aeb67c
  Laurent Modolo authored 3 years ago
  
  c8aeb67c
- fix typo · 0d45b587
  Laurent Modolo authored 3 years ago
  
  0d45b587
- example_variant_calling.nf: fix typo :12 · 626e46bb
  Laurent Modolo authored 3 years ago
  
  626e46bb
- gatk4: fix include path · 179127d0
  Laurent Modolo authored 3 years ago
  
  179127d0
- gatk4: fix include path · 78ed7b01
  Laurent Modolo authored 3 years ago
  
  78ed7b01
- fix emit: for named workflow · 92e0e00a
  Laurent Modolo authored 3 years ago
  
  92e0e00a
- add example of variant calling with gatk4 · e363dd6f
  Laurent Modolo authored 3 years ago
  
  e363dd6f
- bwa: add mapping workflow · 6f67c65c
  Laurent Modolo authored 3 years ago
  
  6f67c65c
Jun 01, 2021
- gatk4: first version of new variant calling workflow · 94772e16
  Laurent Modolo authored 3 years ago
  
  94772e16
May 31, 2021
- emase-zero: remove collect() :20 · d22860c2
  Laurent Modolo authored 3 years ago
  
  d22860c2
- emaze: change input to follow change to t2g in kb main.nf · 9293f190
  Laurent Modolo authored 3 years ago
  
  9293f190
May 28, 2021
- example_marseq.nf: add illumina adaptor removal · 3de4d8de
  Laurent Modolo authored 3 years ago
  
  3de4d8de
- working example of marseq analysis · 6bddba37
  Laurent Modolo authored 3 years ago
  
  6bddba37
- kb: working marseq quantif pipeline · d448ef6a
  Laurent Modolo authored 3 years ago
  
  d448ef6a
May 26, 2021
- emaze: change imput from gtf to fasta to compute transcript length · 4eef1122
  Laurent Modolo authored 3 years ago
  
  4eef1122
- alntools: separate transcript length computation · 6231fc3f
  Laurent Modolo authored 3 years ago
  
  6231fc3f
May 25, 2021
- gffread: add awk cmd to remove duplicated transcript · c355cfa8
  Laurent Modolo authored 3 years ago
  
  c355cfa8
May 21, 2021
- gffread: add -x and -M option · d62c64d2
  Laurent Modolo authored 3 years ago
  
  d62c64d2
- gffread: add -x option · b9a27794
  Laurent Modolo authored 3 years ago
  
  b9a27794
May 20, 2021
- gffread: add main.nf · 3dd05762
  Laurent Modolo authored 3 years ago
  
  3dd05762
- gffread: add version 0.12.2 · 9eb61947
  Laurent Modolo authored 3 years ago
  
  9eb61947
May 18, 2021
- kb: change t2g.py to use classical transcript and gene gtf format · bd5b4ace
  Laurent Modolo authored 3 years ago
  
  bd5b4ace
- bowtie2: change file_id handling · 192fef09
  Laurent Modolo authored 3 years ago
  
  192fef09
May 17, 2021
- kb: fix missing \ at end of lines · 5a367584
  Laurent Modolo authored 3 years ago
  
  5a367584
May 12, 2021
- kb: fix t2g.py to have first transcript and then gene · fdb6eac6
  Laurent Modolo authored 3 years ago
  
  fdb6eac6
May 11, 2021
- cutadapt: update output name and capture · cb215113
  Laurent Modolo authored 3 years ago
  
  cb215113
- cutadapt: update to last contributing guide version · 5af36606
  Laurent Modolo authored 3 years ago
  
  5af36606
May 10, 2021
- alntools: try fix for bam bai · 451c10bb
  Laurent Modolo authored 3 years ago
  
  451c10bb
May 07, 2021
- kb: remove view() · 972e601e
  Laurent Modolo authored 3 years ago
  
  972e601e
- flexi_splitter: split computation per plate · 1852fe84
  Laurent Modolo authored 3 years ago
  
  1852fe84
- flexi_splitter: fix tag :25 · 1d80497e
  Laurent Modolo authored 3 years ago
  
  1d80497e
- flexi_splitter: fixed group_fastq process · b92686a4
  Laurent Modolo authored 3 years ago
  
  b92686a4
May 06, 2021
- alntools: remove chunck option · 6cc2e1a8
  Laurent Modolo authored 3 years ago
  
  6cc2e1a8
- emase-zero: change bam to bam_idx · 833c88f7
  Laurent Modolo authored 3 years ago
  
  833c88f7