Merge branch 'master' into dev

f5642ccc · Laurent Modolo · 3a681558 · ea7618fc · 3a681558 · 3a681558
Unverified Commit f5642ccc authored 5 years ago by Laurent Modolo
--- a/src/.singularity_modules/trimmomatic/0.36/trimmomatic.def
+++ b/src/.singularity_modules/trimmomatic/0.36/trimmomatic.def
--- a/src/.singularity_modules/ucsc/375/build.sh
+++ b/src/.singularity_modules/ucsc/375/build.sh
--- a/src/.singularity_modules/ucsc/375/ucsc
+++ b/src/.singularity_modules/ucsc/375/ucsc
--- a/src/.singularity_modules/ucsc/375/ucsc.def
+++ b/src/.singularity_modules/ucsc/375/ucsc.def
--- a/src/.singularity_modules/umi_tools/1.0.0/build.sh
+++ b/src/.singularity_modules/umi_tools/1.0.0/build.sh
--- a/src/.singularity_modules/umi_tools/1.0.0/umi_tools
+++ b/src/.singularity_modules/umi_tools/1.0.0/umi_tools
--- a/src/.singularity_modules/umi_tools/1.0.0/umi_tools.def
+++ b/src/.singularity_modules/umi_tools/1.0.0/umi_tools.def
--- a/src/.singularity_modules/urqt/d62c1f8/build.sh
+++ b/src/.singularity_modules/urqt/d62c1f8/build.sh
--- a/src/.singularity_modules/urqt/d62c1f8/urqt
+++ b/src/.singularity_modules/urqt/d62c1f8/urqt
--- a/src/.singularity_modules/urqt/d62c1f8/urqt.def
+++ b/src/.singularity_modules/urqt/d62c1f8/urqt.def
--- a/src/.update_config.sh
+++ b/src/.update_config.sh
--- a/src/nextflow.pbs
+++ b/src/nextflow.pbs
--- a/src/nf_modules/star/indexing.config
+++ b/src/nf_modules/star/indexing.config
--- a/src/nf_modules/star/indexing.nf
+++ b/src/nf_modules/star/indexing.nf
--- a/src/nf_modules/star/mapping_paired.config
+++ b/src/nf_modules/star/mapping_paired.config
--- a/src/nf_modules/star/mapping_paired.nf
+++ b/src/nf_modules/star/mapping_paired.nf
--- a/src/nf_modules/star/mapping_single.config
+++ b/src/nf_modules/star/mapping_single.config
--- a/src/nf_modules/star/mapping_single.nf
+++ b/src/nf_modules/star/mapping_single.nf
--- a/src/nf_modules/star/tests.sh
+++ b/src/nf_modules/star/tests.sh