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Unverified Commit bb06add8 authored by Laurent Modolo's avatar Laurent Modolo
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nf_modules: fix cutadapt version

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src/nf_modules/cutadapt/adaptor_removal_paired.config
+ 4
− 4
View file @ bb06add8
...@@ -4,7 +4,7 @@ profiles { ...@@ -4,7 +4,7 @@ profiles {
docker.enabled = true docker.enabled = true
process { process {
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -14,7 +14,7 @@ profiles { ...@@ -14,7 +14,7 @@ profiles {
singularity.cacheDir = "./bin/" singularity.cacheDir = "./bin/"
process { process {
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -25,7 +25,7 @@ profiles { ...@@ -25,7 +25,7 @@ profiles {
singularity.runOptions = "--bind /Xnfs,/scratch" singularity.runOptions = "--bind /Xnfs,/scratch"
process{ process{
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 1 cpus = 1
...@@ -41,7 +41,7 @@ profiles { ...@@ -41,7 +41,7 @@ profiles {
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
stageOutMode = "rsync" stageOutMode = "rsync"
......
src/nf_modules/cutadapt/adaptor_removal_single.config
+ 4
− 4
View file @ bb06add8
...@@ -4,7 +4,7 @@ profiles { ...@@ -4,7 +4,7 @@ profiles {
docker.enabled = true docker.enabled = true
process { process {
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -14,7 +14,7 @@ profiles { ...@@ -14,7 +14,7 @@ profiles {
singularity.cacheDir = "./bin/" singularity.cacheDir = "./bin/"
process { process {
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -25,7 +25,7 @@ profiles { ...@@ -25,7 +25,7 @@ profiles {
singularity.runOptions = "--bind /Xnfs,/scratch" singularity.runOptions = "--bind /Xnfs,/scratch"
process{ process{
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 1 cpus = 1
...@@ -41,7 +41,7 @@ profiles { ...@@ -41,7 +41,7 @@ profiles {
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: adaptor_removal { withName: adaptor_removal {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
stageOutMode = "rsync" stageOutMode = "rsync"
......
src/nf_modules/cutadapt/trimming_paired.config
+ 4
− 4
View file @ bb06add8
...@@ -4,7 +4,7 @@ profiles { ...@@ -4,7 +4,7 @@ profiles {
docker.enabled = true docker.enabled = true
process { process {
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -14,7 +14,7 @@ profiles { ...@@ -14,7 +14,7 @@ profiles {
singularity.cacheDir = "./bin/" singularity.cacheDir = "./bin/"
process { process {
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -25,7 +25,7 @@ profiles { ...@@ -25,7 +25,7 @@ profiles {
singularity.runOptions = "--bind /Xnfs,/scratch" singularity.runOptions = "--bind /Xnfs,/scratch"
process{ process{
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 1 cpus = 1
...@@ -41,7 +41,7 @@ profiles { ...@@ -41,7 +41,7 @@ profiles {
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
stageOutMode = "rsync" stageOutMode = "rsync"
......
src/nf_modules/cutadapt/trimming_single.config
+ 4
− 4
View file @ bb06add8
...@@ -4,7 +4,7 @@ profiles { ...@@ -4,7 +4,7 @@ profiles {
docker.enabled = true docker.enabled = true
process { process {
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -14,7 +14,7 @@ profiles { ...@@ -14,7 +14,7 @@ profiles {
singularity.cacheDir = "./bin/" singularity.cacheDir = "./bin/"
process { process {
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
cpus = 1 cpus = 1
} }
} }
...@@ -25,7 +25,7 @@ profiles { ...@@ -25,7 +25,7 @@ profiles {
singularity.runOptions = "--bind /Xnfs,/scratch" singularity.runOptions = "--bind /Xnfs,/scratch"
process{ process{
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
executor = "sge" executor = "sge"
clusterOptions = "-cwd -V" clusterOptions = "-cwd -V"
cpus = 1 cpus = 1
...@@ -41,7 +41,7 @@ profiles { ...@@ -41,7 +41,7 @@ profiles {
singularity.runOptions = "--bind /pbs,/sps,/scratch" singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{ process{
withName: trimming { withName: trimming {
container = "lbmc/cutadapt:2.4" container = "lbmc/cutadapt:2.1"
scratch = true scratch = true
stageInMode = "copy" stageInMode = "copy"
stageOutMode = "rsync" stageOutMode = "rsync"
......
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