From bb06add81aebf53c1d27f9298f340dba9d4a4989 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Mon, 29 Jun 2020 17:40:52 +0200
Subject: [PATCH] nf_modules: fix cutadapt version

---
 src/nf_modules/cutadapt/adaptor_removal_paired.config | 8 ++++----
 src/nf_modules/cutadapt/adaptor_removal_single.config | 8 ++++----
 src/nf_modules/cutadapt/trimming_paired.config        | 8 ++++----
 src/nf_modules/cutadapt/trimming_single.config        | 8 ++++----
 4 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/src/nf_modules/cutadapt/adaptor_removal_paired.config b/src/nf_modules/cutadapt/adaptor_removal_paired.config
index 02b23b55..ea069fd8 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_paired.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_paired.config
@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -25,7 +25,7 @@ profiles {
     singularity.runOptions = "--bind /Xnfs,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -41,7 +41,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"
diff --git a/src/nf_modules/cutadapt/adaptor_removal_single.config b/src/nf_modules/cutadapt/adaptor_removal_single.config
index 02b23b55..ea069fd8 100644
--- a/src/nf_modules/cutadapt/adaptor_removal_single.config
+++ b/src/nf_modules/cutadapt/adaptor_removal_single.config
@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -25,7 +25,7 @@ profiles {
     singularity.runOptions = "--bind /Xnfs,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -41,7 +41,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: adaptor_removal {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"
diff --git a/src/nf_modules/cutadapt/trimming_paired.config b/src/nf_modules/cutadapt/trimming_paired.config
index 839bce09..d69a7021 100644
--- a/src/nf_modules/cutadapt/trimming_paired.config
+++ b/src/nf_modules/cutadapt/trimming_paired.config
@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -25,7 +25,7 @@ profiles {
     singularity.runOptions = "--bind /Xnfs,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -41,7 +41,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"
diff --git a/src/nf_modules/cutadapt/trimming_single.config b/src/nf_modules/cutadapt/trimming_single.config
index 839bce09..d69a7021 100644
--- a/src/nf_modules/cutadapt/trimming_single.config
+++ b/src/nf_modules/cutadapt/trimming_single.config
@@ -4,7 +4,7 @@ profiles {
     docker.enabled = true
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -14,7 +14,7 @@ profiles {
     singularity.cacheDir = "./bin/"
     process {
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         cpus = 1
       }
     }
@@ -25,7 +25,7 @@ profiles {
     singularity.runOptions = "--bind /Xnfs,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         executor = "sge"
         clusterOptions = "-cwd -V"
         cpus = 1
@@ -41,7 +41,7 @@ profiles {
     singularity.runOptions = "--bind /pbs,/sps,/scratch"
     process{
       withName: trimming {
-        container = "lbmc/cutadapt:2.4"
+        container = "lbmc/cutadapt:2.1"
         scratch = true
         stageInMode = "copy"
         stageOutMode = "rsync"
-- 
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