Verified Commit 4e36c3af authored by Laurent Modolo's avatar Laurent Modolo
Browse files

README.md: change list of tools to table

parent 18e2c482
......@@ -78,26 +78,28 @@ src/nf_modules/Bowtie2/tests/tests.sh
## Available tools
- BEDtools nf: ok / docker: ok / sge: ok
- Bowtie2 nf: ok / docker: ok / sge: ok
- FastQC nf: no / docker: ok / sge: ok
- HISAT2 nf: no / docker: ok / sge: ok
- HTSeq nf: ok / docker: ok / sge: ok
- Kallisto nf: ok / docker: ok / sge: ok
- MultiQC nf: no / docker: ok / sge: ok
- RSEM nf: ok / docker: ok / sge: ok
- SAMtools nf: ok / docker: ok / sge: ok
- SRAtoolkit nf: no / docker: ok / sge: ok
- Salmon nf: no / docker: ok / sge: ok
- TopHat nf: no / docker: ok / sge: ok
- Trimmomatic nf: no / docker: ok / sge: ok
- UrQt nf: ok / docker: ok / sge: ok
- canu nf: ok / docker: ok / sge: ok
- cutadapt nf: ok / docker: ok / sge: ok
- deepTools nf: no / docker: ok / sge: ok
- file_handle nf: no / docker: ok / sge: ok
- pigz nf: no / docker: ok / sge: ok
- sra-tools nf: ok / docker: no / sge: no
| tool | nf module | docker module | sge module |
|------|:---------:|:-------------:|:----------:|
BEDtools | ok | ok | ok
Bowtie2 | ok | ok | ok
FastQC | **no** | ok | ok
HISAT2 | **no** | ok | ok
HTSeq | ok | ok | ok
Kallisto | ok | ok | ok
MultiQC | **no** | ok | ok
RSEM | ok | ok | ok
SAMtools | ok | ok | ok
SRAtoolkit | **no** | ok | ok
Salmon | **no** | ok | ok
TopHat | **no** | ok | ok
Trimmomatic | **no** | ok | ok
UrQt | ok | ok | ok
canu | ok | ok | ok
cutadapt | ok | ok | ok
deepTools | **no** | ok | ok
file_handle | **no** | ok | ok
pigz | **no** | ok | ok
sra-tools | ok | **no** | **no**
......
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