diff --git a/README.md b/README.md index d7871d5d4bd464b91e04c482bb1dd1ef54fe48e1..44edc5b2a427ba0da26710453904b48a6d464235 100644 --- a/README.md +++ b/README.md @@ -78,26 +78,28 @@ src/nf_modules/Bowtie2/tests/tests.sh ## Available tools -- BEDtools nf: ok / docker: ok / sge: ok -- Bowtie2 nf: ok / docker: ok / sge: ok -- FastQC nf: no / docker: ok / sge: ok -- HISAT2 nf: no / docker: ok / sge: ok -- HTSeq nf: ok / docker: ok / sge: ok -- Kallisto nf: ok / docker: ok / sge: ok -- MultiQC nf: no / docker: ok / sge: ok -- RSEM nf: ok / docker: ok / sge: ok -- SAMtools nf: ok / docker: ok / sge: ok -- SRAtoolkit nf: no / docker: ok / sge: ok -- Salmon nf: no / docker: ok / sge: ok -- TopHat nf: no / docker: ok / sge: ok -- Trimmomatic nf: no / docker: ok / sge: ok -- UrQt nf: ok / docker: ok / sge: ok -- canu nf: ok / docker: ok / sge: ok -- cutadapt nf: ok / docker: ok / sge: ok -- deepTools nf: no / docker: ok / sge: ok -- file_handle nf: no / docker: ok / sge: ok -- pigz nf: no / docker: ok / sge: ok -- sra-tools nf: ok / docker: no / sge: no +| tool | nf module | docker module | sge module | +|------|:---------:|:-------------:|:----------:| +BEDtools | ok | ok | ok +Bowtie2 | ok | ok | ok +FastQC | **no** | ok | ok +HISAT2 | **no** | ok | ok +HTSeq | ok | ok | ok +Kallisto | ok | ok | ok +MultiQC | **no** | ok | ok +RSEM | ok | ok | ok +SAMtools | ok | ok | ok +SRAtoolkit | **no** | ok | ok +Salmon | **no** | ok | ok +TopHat | **no** | ok | ok +Trimmomatic | **no** | ok | ok +UrQt | ok | ok | ok +canu | ok | ok | ok +cutadapt | ok | ok | ok +deepTools | **no** | ok | ok +file_handle | **no** | ok | ok +pigz | **no** | ok | ok +sra-tools | ok | **no** | **no**