SAMtools: nf update psmn config

src/nf_modules/SAMtools/filter_bams.config

@@ -11,7 +11,13 @@ profiles {
   psmn {
     process{
       withname: filter_bam {
-        beforeScript = "module purge; module load SAMtools/1.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "SAMtools/1.7"
+        executor = "sge"
+        cpus = 1
+        memory = "20GB"
+        time = "12h"
+        queue = 'monointeldeb128'
       }
     }
   }

src/nf_modules/SAMtools/index_bams.config

@@ -11,7 +11,13 @@ profiles {
   psmn {
     process{
       withname: index_bam {
-        beforeScript = "module purge; module load SAMtools/1.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "SAMtools/1.7"
+        executor = "sge"
+        cpus = 1
+        memory = "20GB"
+        time = "12h"
+        queue = 'monointeldeb128'
       }
     }
   }

src/nf_modules/SAMtools/sort_bams.config

@@ -11,7 +11,13 @@ profiles {
   psmn {
     process{
       withname: sort_bam {
-        beforeScript = "module purge; module load SAMtools/1.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "SAMtools/1.7"
+        executor = "sge"
+        cpus = 1
+        memory = "20GB"
+        time = "12h"
+        queue = 'monointeldeb128'
       }
     }
   }

src/nf_modules/SAMtools/split_bams.config

@@ -11,7 +11,13 @@ profiles {
   psmn {
     process{
       withname: split_bam {
-        beforeScript = "module purge; module load SAMtools/1.7"
+        beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
+        module = "SAMtools/1.7"
+        executor = "sge"
+        cpus = 1
+        memory = "20GB"
+        time = "12h"
+        queue = 'monointeldeb128'
       }
     }
   }