diff --git a/src/nf_modules/SAMtools/filter_bams.config b/src/nf_modules/SAMtools/filter_bams.config index 15692631cde16131484c5cd2ae10edc1f2c3db97..94b96d49b370a821dbeeaa222e26897a0fa9de76 100644 --- a/src/nf_modules/SAMtools/filter_bams.config +++ b/src/nf_modules/SAMtools/filter_bams.config @@ -11,7 +11,13 @@ profiles { psmn { process{ withname: filter_bam { - beforeScript = "module purge; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SAMtools/1.7" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } } diff --git a/src/nf_modules/SAMtools/index_bams.config b/src/nf_modules/SAMtools/index_bams.config index 277e0a36fed8be041f1fa6167dc10aa588392223..dcc102d65b37b99dee85c2350765dd11d464f364 100644 --- a/src/nf_modules/SAMtools/index_bams.config +++ b/src/nf_modules/SAMtools/index_bams.config @@ -11,7 +11,13 @@ profiles { psmn { process{ withname: index_bam { - beforeScript = "module purge; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SAMtools/1.7" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } } diff --git a/src/nf_modules/SAMtools/sort_bams.config b/src/nf_modules/SAMtools/sort_bams.config index d961965c545f7621370e94a2c6c6f5cd9e50e5ba..14a6c7eeae0da23b8deee6041b60a03e8d215655 100644 --- a/src/nf_modules/SAMtools/sort_bams.config +++ b/src/nf_modules/SAMtools/sort_bams.config @@ -11,7 +11,13 @@ profiles { psmn { process{ withname: sort_bam { - beforeScript = "module purge; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SAMtools/1.7" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } } diff --git a/src/nf_modules/SAMtools/split_bams.config b/src/nf_modules/SAMtools/split_bams.config index 43cba89e1eed80e0bd3c14bc8e7c0329ce861ba3..707b20d57d6d004f627d2be7567a0c4a369b9155 100644 --- a/src/nf_modules/SAMtools/split_bams.config +++ b/src/nf_modules/SAMtools/split_bams.config @@ -11,7 +11,13 @@ profiles { psmn { process{ withname: split_bam { - beforeScript = "module purge; module load SAMtools/1.7" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "SAMtools/1.7" + executor = "sge" + cpus = 1 + memory = "20GB" + time = "12h" + queue = 'monointeldeb128' } } }