Skip to content
Snippets Groups Projects
Verified Commit 0a08b991 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

fastqc: main.nf cleanup code

parent b9d4fdda
No related branches found
No related tags found
No related merge requests found
...@@ -16,7 +16,7 @@ process fastqc_fastq_pairedend { ...@@ -16,7 +16,7 @@ process fastqc_fastq_pairedend {
script: script:
""" """
fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ \ fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ \
${reads[0]} ${reads[1]} ${reads[0]} ${reads[1]}
""" """
} }
...@@ -34,7 +34,7 @@ process fastqc_fastq_singleend { ...@@ -34,7 +34,7 @@ process fastqc_fastq_singleend {
script: script:
""" """
fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ ${reads} fastqc --quiet --threads ${task.cpus} --format fastq --outdir ./ ${reads}
""" """
} }
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment