Commits · 440083b2d7daeb6e40c1c0d7c6fb901b7d579e6c · vvanoost / nextflow · GitLab

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Jul 18, 2018
- Update RNAseq sen1∆.nf · 440083b2
  vvanoost authored 6 years ago
  
  440083b2
- modify params.fastq to include the .gz format and modify the output to include... · ec41d5e0
  vvanoost authored 6 years ago
  
  modify params.fastq to include the .gz format and modify the output to include _001 and include the 5' adapter
  ec41d5e0
- change adapter sequences for Nextflex 3' adapter · 742e683a
  vvanoost authored 6 years ago
  
  742e683a
Jul 03, 2018
- Merge branch 'cigogne/nextflow-master' into dev · 1041a4af
  Laurent Modolo authored 6 years ago
  
  Verified
  
  1041a4af
- HISAT2:2.0.0: add docker files · 686a58f8
  Laurent Modolo authored 6 years ago
  
  Verified
  
  686a58f8
- Merge branch 'master' into 'dev' · 0d3ded33
  Laurent Modolo authored 6 years ago
  
  Master See merge request pipelines/nextflow!4
  0d3ded33
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 20, 2018
- src/docker_modules/HISAT2/ : module Hisat2 added · 4a6cde0b
  your name authored 6 years ago
  
  4a6cde0b
- src/docker_modules/UrQt/d62c1f8/Dockerfile : solve conflict · f945638e
  your name authored 6 years ago
  
  f945638e
- src/docker_modules/UrQt/d62c1f8/Dockerfile : correction of the file · 30e42975
  your name authored 6 years ago
  
  30e42975
- TP_computational_biologists.md: add git flow link · 75375e05
  Laurent Modolo authored 6 years ago
  
  Verified
  
  75375e05
- TP_computational_biologists.md · 946942bd
  Laurent Modolo authored 6 years ago
  
  Verified
  
  946942bd
Jun 19, 2018
- TP_computational_biologists.md: add merge instruction · 53680ef9
  Laurent Modolo authored 6 years ago
  
  Verified
  
  53680ef9
- TP_computational_biologists.md: add .nf and .config section · 246784cb
  Laurent Modolo authored 6 years ago
  
  Verified
  
  246784cb
- TP_computational_biologists.md: fix typo · fd1fb24b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  fd1fb24b
- TP_computational_biologists.md: add links for files · 6bb48b6e
  Laurent Modolo authored 6 years ago
  
  Verified
  
  6bb48b6e
Jun 18, 2018
- TP_computational_biologists.md: add Docker and SGE section · 077944ba
  Laurent Modolo authored 6 years ago
  
  Verified
  
  077944ba
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  Verified
  
  3d96bc33
- Kallisto/0.44.0: add Dockerfile · e9a183e3
  Laurent Modolo authored 6 years ago
  
  Verified
  
  e9a183e3
- Kallisto/0.44.0 : add docker files · b9807a5c
  Laurent Modolo authored 6 years ago
  
  Verified
  
  b9807a5c
- update sge_modules · edeaacfe
  Laurent Modolo authored 6 years ago
  
  Verified
  
  edeaacfe
- doc/Makefile: add TP_computational_biologists · db7ff2e3
  Laurent Modolo authored 6 years ago
  
  Verified
  
  db7ff2e3
Jun 07, 2018
- README.md : add infos on forking and syncing · 4b81bc8b
  Laurent Modolo authored 6 years ago
  
  Verified
  
  4b81bc8b
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  Verified
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  Verified
  
  39257434
Jun 06, 2018
- Rnaseq.config : config for mapping_fastq and index_fasta · daa8a701
  nfontrod authored 6 years ago
  
  daa8a701
- Rnaseq.nf : index_fasta and mapping_fasta · 9ec5b176
  nfontrod authored 6 years ago
  
  9ec5b176
- Rnaseq.config :config fasta_from_bed · 811bd6bf
  nfontrod authored 6 years ago
  
  811bd6bf
- Rnaseq.nf : adding process fasta_from_bed · 02f41b4f
  nfontrod authored 6 years ago
  
  02f41b4f
- Rnaseq.nf : correct trimming process · 6b3092bb
  nfontrod authored 6 years ago
  
  6b3092bb
- Rnaseq.config : addition of trimming config · 2992a141
  nfontrod authored 6 years ago
  
  2992a141
- Rnaseq.nf : add trimming process · 240b4d6d
  nfontrod authored 6 years ago
  
  240b4d6d
- Rnaseq.config : docker config for adaptor_removal process · b04822b5
  nfontrod authored 6 years ago
  
  b04822b5
- Rnaseq.nf : creating process adaptor_removal · ce348ae2
  nfontrod authored 6 years ago
  
  ce348ae2
- UrQt: Dockerfile fix git version · a2d065e4
  Laurent Modolo authored 6 years ago
  
  a2d065e4
- fasta_sampler.nt : output modification · 514305e3
  nfontrod authored 6 years ago
  
  514305e3
- fasta_sampler.nf : publish · 8cdb9175
  nfontrod authored 6 years ago
  
  8cdb9175
- fasta_sampler.nf : Chanel definition · 3f28a4a0
  nfontrod authored 6 years ago
  
  3f28a4a0
- fasta_sampler_TP1 : add process sample_fasta · 46210bc9
  nfontrod authored 6 years ago
  
  46210bc9
- TP.md: add nextflow options · 6289b049
  Laurent Modolo authored 6 years ago
  
  Verified
  
  6289b049