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Verified Commit 789625d7 authored by Laurent Modolo's avatar Laurent Modolo
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singularity build.sh: add error catch on build

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with 16 additions and 13 deletions
#/bin/sh
sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def
sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def && \
singularity sign bin/music:6613c53.sif
#/bin/sh
sudo singularity build --force bin/picard:2.18.11.sif src/singularity_modules/picard/2.18.11/picard.def
sudo singularity build --force bin/picard:2.18.11.sif src/singularity_modules/picard/2.18.11/picard.def && \
singularity sign bin/picard:2.18.11.sif
#/bin/sh
sudo singularity build --force bin/pigz:2.4.sif src/singularity_modules/pigz/2.4/pigz.def
sudo singularity build --force bin/pigz:2.4.sif src/singularity_modules/pigz/2.4/pigz.def && \
singularity sign bin/pigz:2.4.sif
#/bin/sh
sudo singularity build --force bin/rsem:1.3.0.sif src/singularity_modules/rsem/1.3.0/rsem.def
sudo singularity build --force bin/rsem:1.3.0.sif src/singularity_modules/rsem/1.3.0/rsem.def && \
singularity sign bin/rsem:1.3.0.sif
#/bin/sh
sudo singularity build --force bin/salmon:0.8.2.sif src/singularity_modules/salmon/0.8.2/salmon.def
sudo singularity build --force bin/salmon:0.8.2.sif src/singularity_modules/salmon/0.8.2/salmon.def && \
singularity sign bin/salmon:0.8.2.sif
#/bin/sh
sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def
sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def && \
singularity sign bin/sambamba:0.6.7.sif
#/bin/sh
sudo singularity build --force bin/samblaster:0.1.24.sif src/singularity_modules/samblaster/0.1.24/samblaster.def
sudo singularity build --force bin/samblaster:0.1.24.sif src/singularity_modules/samblaster/0.1.24/samblaster.def && \
singularity sign bin/samblaster:0.1.24.sif
#/bin/sh
sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def
sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def && \
singularity sign bin/samtools:1.7.sif
#/bin/sh
sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def
sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def && \
singularity sign bin/sratoolkit:2.8.2.sif
#/bin/sh
sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def
sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def && \
singularity sign bin/tophat:2.1.1.sif
#/bin/sh
sudo singularity build --force bin/trimmomatic:0.36.sif src/singularity_modules/trimmomatic/0.36/trimmomatic.def
sudo singularity build --force bin/trimmomatic:0.36.sif src/singularity_modules/trimmomatic/0.36/trimmomatic.def && \
singularity sign bin/trimmomatic:0.36.sif
#/bin/sh
sudo singularity build --force bin/ucsc:375.sif src/singularity_modules/ucsc/375/ucsc.def
sudo singularity build --force bin/ucsc:375.sif src/singularity_modules/ucsc/375/ucsc.def && \
singularity sign bin/ucsc:375.sif
#/bin/sh
sudo singularity build --force bin/urqt:d62c1f8.sif src/singularity_modules/urqt/d62c1f8/urqt.def
sudo singularity build --force bin/urqt:d62c1f8.sif src/singularity_modules/urqt/d62c1f8/urqt.def && \
singularity sign bin/urqt:d62c1f8.sif
#/bin/sh
sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/bowtie/1.2.2/bowtie.def && \
singularity sign bin/bowtie:1.2.2.sif
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