From 789625d7f36b747d8608fd3095668cbf60913bc4 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Tue, 5 Mar 2019 14:17:32 +0100 Subject: [PATCH] singularity build.sh: add error catch on build --- src/singularity_modules/bcftools/1.7/build.sh | 2 +- src/singularity_modules/bedtools/2.25.0/build.sh | 2 +- src/singularity_modules/bioawk/1.0/build.sh | 2 +- src/singularity_modules/bowtie/1.2.2/build.sh | 2 +- src/singularity_modules/bowtie2/2.3.4.1/build.sh | 2 +- src/singularity_modules/bwa/0.7.17/build.sh | 2 +- src/singularity_modules/canu/1.6/build.sh | 2 +- src/singularity_modules/cutadapt/1.14/build.sh | 2 +- src/singularity_modules/cutadapt/1.15/build.sh | 2 +- src/singularity_modules/deeptools/3.0.2/build.sh | 2 +- src/singularity_modules/deeptools/3.1.1/build.sh | 2 +- src/singularity_modules/fastqc/0.11.5/build.sh | 2 +- src/singularity_modules/file_handle/0.1.1/build.sh | 2 +- src/singularity_modules/gatk/4.0.8.1/build.sh | 2 +- src/singularity_modules/hisat2/2.0.0/build.sh | 2 +- src/singularity_modules/htseq/0.8.0/build.sh | 2 +- src/singularity_modules/kallisto/0.43.1/build.sh | 2 +- src/singularity_modules/kallisto/0.44.0/build.sh | 2 +- src/singularity_modules/macs2/2.1.0/build.sh | 3 +++ src/singularity_modules/multiqc/1.0/build.sh | 2 +- src/singularity_modules/music/6613c53/build.sh | 2 +- src/singularity_modules/picard/2.18.11/build.sh | 2 +- src/singularity_modules/pigz/2.4/build.sh | 2 +- src/singularity_modules/rsem/1.3.0/build.sh | 2 +- src/singularity_modules/salmon/0.8.2/build.sh | 2 +- src/singularity_modules/sambamba/0.6.7/build.sh | 2 +- src/singularity_modules/samblaster/0.1.24/build.sh | 2 +- src/singularity_modules/samtools/1.7/build.sh | 2 +- src/singularity_modules/sratoolkit/2.8.2/build.sh | 2 +- src/singularity_modules/tophat/2.1.1/build.sh | 2 +- src/singularity_modules/trimmomatic/0.36/build.sh | 2 +- src/singularity_modules/ucsc/375/build.sh | 2 +- src/singularity_modules/urqt/d62c1f8/build.sh | 2 +- src/singularity_modules/vap/1.1.0/build.sh | 3 +++ 34 files changed, 38 insertions(+), 32 deletions(-) create mode 100755 src/singularity_modules/macs2/2.1.0/build.sh create mode 100755 src/singularity_modules/vap/1.1.0/build.sh diff --git a/src/singularity_modules/bcftools/1.7/build.sh b/src/singularity_modules/bcftools/1.7/build.sh index 14ff850..bee821b 100755 --- a/src/singularity_modules/bcftools/1.7/build.sh +++ b/src/singularity_modules/bcftools/1.7/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bcftools:1.7.sif src/singularity_modules/bcftools/1.7/bcftools.def +sudo singularity build --force bin/bcftools:1.7.sif src/singularity_modules/bcftools/1.7/bcftools.def && \ singularity sign bin/bcftools:1.7.sif diff --git a/src/singularity_modules/bedtools/2.25.0/build.sh b/src/singularity_modules/bedtools/2.25.0/build.sh index 91a1cfe..60644b4 100755 --- a/src/singularity_modules/bedtools/2.25.0/build.sh +++ b/src/singularity_modules/bedtools/2.25.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bedtools:2.25.0.sif src/singularity_modules/bedtools/2.25.0/bedtools.def +sudo singularity build --force bin/bedtools:2.25.0.sif src/singularity_modules/bedtools/2.25.0/bedtools.def && \ singularity sign bin/bedtools:2.25.0.sif diff --git a/src/singularity_modules/bioawk/1.0/build.sh b/src/singularity_modules/bioawk/1.0/build.sh index 6affbc2..3f8adc0 100755 --- a/src/singularity_modules/bioawk/1.0/build.sh +++ b/src/singularity_modules/bioawk/1.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bioawk:1.0.sif src/singularity_modules/bioawk/1.0/bioawk.def +sudo singularity build --force bin/bioawk:1.0.sif src/singularity_modules/bioawk/1.0/bioawk.def && \ singularity sign bin/bioawk:1.0.sif diff --git a/src/singularity_modules/bowtie/1.2.2/build.sh b/src/singularity_modules/bowtie/1.2.2/build.sh index 29590dd..3470fca 100755 --- a/src/singularity_modules/bowtie/1.2.2/build.sh +++ b/src/singularity_modules/bowtie/1.2.2/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/bowtie/1.2.2/bowtie.def +sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/bowtie/1.2.2/bowtie.def && \ singularity sign bin/bowtie:1.2.2.sif diff --git a/src/singularity_modules/bowtie2/2.3.4.1/build.sh b/src/singularity_modules/bowtie2/2.3.4.1/build.sh index 8d7c7f2..f9f58ae 100755 --- a/src/singularity_modules/bowtie2/2.3.4.1/build.sh +++ b/src/singularity_modules/bowtie2/2.3.4.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bowtie2:2.3.4.1.sif src/singularity_modules/bowtie2/2.3.4.1/bowtie2.def +sudo singularity build --force bin/bowtie2:2.3.4.1.sif src/singularity_modules/bowtie2/2.3.4.1/bowtie2.def && \ singularity sign bin/bowtie2:2.3.4.1.sif diff --git a/src/singularity_modules/bwa/0.7.17/build.sh b/src/singularity_modules/bwa/0.7.17/build.sh index 91217c0..a340c5f 100755 --- a/src/singularity_modules/bwa/0.7.17/build.sh +++ b/src/singularity_modules/bwa/0.7.17/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/bwa:0.7.17.sif src/singularity_modules/bwa/0.7.17/bwa.def +sudo singularity build --force bin/bwa:0.7.17.sif src/singularity_modules/bwa/0.7.17/bwa.def && \ singularity sign bin/bwa:0.7.17.sif diff --git a/src/singularity_modules/canu/1.6/build.sh b/src/singularity_modules/canu/1.6/build.sh index b3c76d1..591cb66 100755 --- a/src/singularity_modules/canu/1.6/build.sh +++ b/src/singularity_modules/canu/1.6/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/canu:1.6.sif src/singularity_modules/canu/1.6/canu.def +sudo singularity build --force bin/canu:1.6.sif src/singularity_modules/canu/1.6/canu.def && \ singularity sign bin/canu:1.6.sif diff --git a/src/singularity_modules/cutadapt/1.14/build.sh b/src/singularity_modules/cutadapt/1.14/build.sh index d397310..5327f7c 100755 --- a/src/singularity_modules/cutadapt/1.14/build.sh +++ b/src/singularity_modules/cutadapt/1.14/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/cutadapt:1.14.sif src/singularity_modules/cutadapt/1.14/cutadapt.def +sudo singularity build --force bin/cutadapt:1.14.sif src/singularity_modules/cutadapt/1.14/cutadapt.def && \ singularity sign bin/cutadapt:1.14.sif diff --git a/src/singularity_modules/cutadapt/1.15/build.sh b/src/singularity_modules/cutadapt/1.15/build.sh index 440d84a..c002354 100755 --- a/src/singularity_modules/cutadapt/1.15/build.sh +++ b/src/singularity_modules/cutadapt/1.15/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/cutadapt:1.15.sif src/singularity_modules/cutadapt/1.15/cutadapt.def +sudo singularity build --force bin/cutadapt:1.15.sif src/singularity_modules/cutadapt/1.15/cutadapt.def && \ singularity sign bin/cutadapt:1.15.sif diff --git a/src/singularity_modules/deeptools/3.0.2/build.sh b/src/singularity_modules/deeptools/3.0.2/build.sh index b9b8375..9e59a81 100755 --- a/src/singularity_modules/deeptools/3.0.2/build.sh +++ b/src/singularity_modules/deeptools/3.0.2/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/deeptools:3.0.2.sif src/singularity_modules/deeptools/3.0.2/deeptools.def +sudo singularity build --force bin/deeptools:3.0.2.sif src/singularity_modules/deeptools/3.0.2/deeptools.def && \ singularity sign bin/deeptools:3.0.2.sif diff --git a/src/singularity_modules/deeptools/3.1.1/build.sh b/src/singularity_modules/deeptools/3.1.1/build.sh index 07c3840..b921057 100755 --- a/src/singularity_modules/deeptools/3.1.1/build.sh +++ b/src/singularity_modules/deeptools/3.1.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/deeptools:3.1.1.sif src/singularity_modules/deeptools/3.1.1/deeptools.def +sudo singularity build --force bin/deeptools:3.1.1.sif src/singularity_modules/deeptools/3.1.1/deeptools.def && \ singularity sign bin/deeptools:3.1.1.sif diff --git a/src/singularity_modules/fastqc/0.11.5/build.sh b/src/singularity_modules/fastqc/0.11.5/build.sh index 1787f2b..b398336 100755 --- a/src/singularity_modules/fastqc/0.11.5/build.sh +++ b/src/singularity_modules/fastqc/0.11.5/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/fastqc:0.11.5.sif src/singularity_modules/fastqc/0.11.5/fastqc.def +sudo singularity build --force bin/fastqc:0.11.5.sif src/singularity_modules/fastqc/0.11.5/fastqc.def && \ singularity sign bin/fastqc:0.11.5.sif diff --git a/src/singularity_modules/file_handle/0.1.1/build.sh b/src/singularity_modules/file_handle/0.1.1/build.sh index bc7db8a..17122f2 100755 --- a/src/singularity_modules/file_handle/0.1.1/build.sh +++ b/src/singularity_modules/file_handle/0.1.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/file_handle:0.1.1.sif src/singularity_modules/file_handle/0.1.1/file_handle.def +sudo singularity build --force bin/file_handle:0.1.1.sif src/singularity_modules/file_handle/0.1.1/file_handle.def && \ singularity sign bin/file_handle:0.1.1.sif diff --git a/src/singularity_modules/gatk/4.0.8.1/build.sh b/src/singularity_modules/gatk/4.0.8.1/build.sh index 0ebc054..5158959 100755 --- a/src/singularity_modules/gatk/4.0.8.1/build.sh +++ b/src/singularity_modules/gatk/4.0.8.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/gatk:4.0.8.1.sif src/singularity_modules/gatk/4.0.8.1/gatk.def +sudo singularity build --force bin/gatk:4.0.8.1.sif src/singularity_modules/gatk/4.0.8.1/gatk.def && \ singularity sign bin/gatk:4.0.8.1.sif diff --git a/src/singularity_modules/hisat2/2.0.0/build.sh b/src/singularity_modules/hisat2/2.0.0/build.sh index 3335ba3..e2b1875 100755 --- a/src/singularity_modules/hisat2/2.0.0/build.sh +++ b/src/singularity_modules/hisat2/2.0.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/hisat2:2.0.0.sif src/singularity_modules/hisat2/2.0.0/hisat2.def +sudo singularity build --force bin/hisat2:2.0.0.sif src/singularity_modules/hisat2/2.0.0/hisat2.def && \ singularity sign bin/hisat2:2.0.0.sif diff --git a/src/singularity_modules/htseq/0.8.0/build.sh b/src/singularity_modules/htseq/0.8.0/build.sh index f5fe19a..73b14c9 100755 --- a/src/singularity_modules/htseq/0.8.0/build.sh +++ b/src/singularity_modules/htseq/0.8.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/htseq:0.8.0.sif src/singularity_modules/htseq/0.8.0/htseq.def +sudo singularity build --force bin/htseq:0.8.0.sif src/singularity_modules/htseq/0.8.0/htseq.def && \ singularity sign bin/htseq:0.8.0.sif diff --git a/src/singularity_modules/kallisto/0.43.1/build.sh b/src/singularity_modules/kallisto/0.43.1/build.sh index 7618631..8ecfe6e 100755 --- a/src/singularity_modules/kallisto/0.43.1/build.sh +++ b/src/singularity_modules/kallisto/0.43.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/kallisto:0.43.1.sif src/singularity_modules/kallisto/0.43.1/kallisto.def +sudo singularity build --force bin/kallisto:0.43.1.sif src/singularity_modules/kallisto/0.43.1/kallisto.def && \ singularity sign bin/kallisto:0.43.1.sif diff --git a/src/singularity_modules/kallisto/0.44.0/build.sh b/src/singularity_modules/kallisto/0.44.0/build.sh index 537303d..10a6cc0 100755 --- a/src/singularity_modules/kallisto/0.44.0/build.sh +++ b/src/singularity_modules/kallisto/0.44.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/kallisto:0.44.0.sif src/singularity_modules/kallisto/0.44.0/kallisto.def +sudo singularity build --force bin/kallisto:0.44.0.sif src/singularity_modules/kallisto/0.44.0/kallisto.def && \ singularity sign bin/kallisto:0.44.0.sif diff --git a/src/singularity_modules/macs2/2.1.0/build.sh b/src/singularity_modules/macs2/2.1.0/build.sh new file mode 100755 index 0000000..3470fca --- /dev/null +++ b/src/singularity_modules/macs2/2.1.0/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/bowtie/1.2.2/bowtie.def && \ +singularity sign bin/bowtie:1.2.2.sif diff --git a/src/singularity_modules/multiqc/1.0/build.sh b/src/singularity_modules/multiqc/1.0/build.sh index 1d9da65..36f6298 100755 --- a/src/singularity_modules/multiqc/1.0/build.sh +++ b/src/singularity_modules/multiqc/1.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/multiqc:1.0.sif src/singularity_modules/multiqc/1.0/multiqc.def +sudo singularity build --force bin/multiqc:1.0.sif src/singularity_modules/multiqc/1.0/multiqc.def && \ singularity sign bin/multiqc:1.0.sif diff --git a/src/singularity_modules/music/6613c53/build.sh b/src/singularity_modules/music/6613c53/build.sh index 12d1b96..94b5e31 100755 --- a/src/singularity_modules/music/6613c53/build.sh +++ b/src/singularity_modules/music/6613c53/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def +sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def && \ singularity sign bin/music:6613c53.sif diff --git a/src/singularity_modules/picard/2.18.11/build.sh b/src/singularity_modules/picard/2.18.11/build.sh index aa29178..2c985f4 100755 --- a/src/singularity_modules/picard/2.18.11/build.sh +++ b/src/singularity_modules/picard/2.18.11/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/picard:2.18.11.sif src/singularity_modules/picard/2.18.11/picard.def +sudo singularity build --force bin/picard:2.18.11.sif src/singularity_modules/picard/2.18.11/picard.def && \ singularity sign bin/picard:2.18.11.sif diff --git a/src/singularity_modules/pigz/2.4/build.sh b/src/singularity_modules/pigz/2.4/build.sh index d4ce7f7..9c1bfee 100755 --- a/src/singularity_modules/pigz/2.4/build.sh +++ b/src/singularity_modules/pigz/2.4/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/pigz:2.4.sif src/singularity_modules/pigz/2.4/pigz.def +sudo singularity build --force bin/pigz:2.4.sif src/singularity_modules/pigz/2.4/pigz.def && \ singularity sign bin/pigz:2.4.sif diff --git a/src/singularity_modules/rsem/1.3.0/build.sh b/src/singularity_modules/rsem/1.3.0/build.sh index 88e2e4e..de64794 100755 --- a/src/singularity_modules/rsem/1.3.0/build.sh +++ b/src/singularity_modules/rsem/1.3.0/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/rsem:1.3.0.sif src/singularity_modules/rsem/1.3.0/rsem.def +sudo singularity build --force bin/rsem:1.3.0.sif src/singularity_modules/rsem/1.3.0/rsem.def && \ singularity sign bin/rsem:1.3.0.sif diff --git a/src/singularity_modules/salmon/0.8.2/build.sh b/src/singularity_modules/salmon/0.8.2/build.sh index e9496bb..42464c1 100755 --- a/src/singularity_modules/salmon/0.8.2/build.sh +++ b/src/singularity_modules/salmon/0.8.2/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/salmon:0.8.2.sif src/singularity_modules/salmon/0.8.2/salmon.def +sudo singularity build --force bin/salmon:0.8.2.sif src/singularity_modules/salmon/0.8.2/salmon.def && \ singularity sign bin/salmon:0.8.2.sif diff --git a/src/singularity_modules/sambamba/0.6.7/build.sh b/src/singularity_modules/sambamba/0.6.7/build.sh index 809fc37..fad93ea 100755 --- a/src/singularity_modules/sambamba/0.6.7/build.sh +++ b/src/singularity_modules/sambamba/0.6.7/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def +sudo singularity build --force bin/sambamba:0.6.7.sif src/singularity_modules/sambamba/0.6.7/sambamba.def && \ singularity sign bin/sambamba:0.6.7.sif diff --git a/src/singularity_modules/samblaster/0.1.24/build.sh b/src/singularity_modules/samblaster/0.1.24/build.sh index 7e93d79..9a5b9fe 100755 --- a/src/singularity_modules/samblaster/0.1.24/build.sh +++ b/src/singularity_modules/samblaster/0.1.24/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/samblaster:0.1.24.sif src/singularity_modules/samblaster/0.1.24/samblaster.def +sudo singularity build --force bin/samblaster:0.1.24.sif src/singularity_modules/samblaster/0.1.24/samblaster.def && \ singularity sign bin/samblaster:0.1.24.sif diff --git a/src/singularity_modules/samtools/1.7/build.sh b/src/singularity_modules/samtools/1.7/build.sh index 695f99c..5e72025 100755 --- a/src/singularity_modules/samtools/1.7/build.sh +++ b/src/singularity_modules/samtools/1.7/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def +sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def && \ singularity sign bin/samtools:1.7.sif diff --git a/src/singularity_modules/sratoolkit/2.8.2/build.sh b/src/singularity_modules/sratoolkit/2.8.2/build.sh index 7464d50..fd8586e 100755 --- a/src/singularity_modules/sratoolkit/2.8.2/build.sh +++ b/src/singularity_modules/sratoolkit/2.8.2/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def +sudo singularity build --force bin/sratoolkit:2.8.2.sif src/singularity_modules/sratoolkit/2.8.2/sratoolkit.def && \ singularity sign bin/sratoolkit:2.8.2.sif diff --git a/src/singularity_modules/tophat/2.1.1/build.sh b/src/singularity_modules/tophat/2.1.1/build.sh index 07f2748..d0e2144 100755 --- a/src/singularity_modules/tophat/2.1.1/build.sh +++ b/src/singularity_modules/tophat/2.1.1/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def +sudo singularity build --force bin/tophat:2.1.1.sif src/singularity_modules/tophat/2.1.1/tophat.def && \ singularity sign bin/tophat:2.1.1.sif diff --git a/src/singularity_modules/trimmomatic/0.36/build.sh b/src/singularity_modules/trimmomatic/0.36/build.sh index 964f0e8..3b3d872 100755 --- a/src/singularity_modules/trimmomatic/0.36/build.sh +++ b/src/singularity_modules/trimmomatic/0.36/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/trimmomatic:0.36.sif src/singularity_modules/trimmomatic/0.36/trimmomatic.def +sudo singularity build --force bin/trimmomatic:0.36.sif src/singularity_modules/trimmomatic/0.36/trimmomatic.def && \ singularity sign bin/trimmomatic:0.36.sif diff --git a/src/singularity_modules/ucsc/375/build.sh b/src/singularity_modules/ucsc/375/build.sh index ce48486..ab60035 100755 --- a/src/singularity_modules/ucsc/375/build.sh +++ b/src/singularity_modules/ucsc/375/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/ucsc:375.sif src/singularity_modules/ucsc/375/ucsc.def +sudo singularity build --force bin/ucsc:375.sif src/singularity_modules/ucsc/375/ucsc.def && \ singularity sign bin/ucsc:375.sif diff --git a/src/singularity_modules/urqt/d62c1f8/build.sh b/src/singularity_modules/urqt/d62c1f8/build.sh index 81351fc..7ad1eb6 100755 --- a/src/singularity_modules/urqt/d62c1f8/build.sh +++ b/src/singularity_modules/urqt/d62c1f8/build.sh @@ -1,3 +1,3 @@ #/bin/sh -sudo singularity build --force bin/urqt:d62c1f8.sif src/singularity_modules/urqt/d62c1f8/urqt.def +sudo singularity build --force bin/urqt:d62c1f8.sif src/singularity_modules/urqt/d62c1f8/urqt.def && \ singularity sign bin/urqt:d62c1f8.sif diff --git a/src/singularity_modules/vap/1.1.0/build.sh b/src/singularity_modules/vap/1.1.0/build.sh new file mode 100755 index 0000000..3470fca --- /dev/null +++ b/src/singularity_modules/vap/1.1.0/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/bowtie:1.2.2.sif src/singularity_modules/bowtie/1.2.2/bowtie.def && \ +singularity sign bin/bowtie:1.2.2.sif -- GitLab