samtools: add singularity files

src/singularity_modules/music/6613c53/build.sh

+#/bin/sh
+sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def
+singularity sign bin/music:6613c53.sif

src/singularity_modules/music/6613c53/music.def

+Bootstrap: docker
+From: alpine:3.8
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+MUSIC_VERSION=6613c53
+SAMTOOLS_VERSION=1.7
+PACKAGES="git \
+             make \
+             gcc \
+             musl-dev \
+             zlib-dev \
+             ncurses-dev \
+             bzip2-dev \
+             xz-dev \
+             ca-certificates \
+             bash"
+
+apk update && \
+apk add ${PACKAGES}
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+git clone https://github.com/gersteinlab/MUSIC.git && \
+cd MUSIC && \
+git checkout ${MUSIC_VERSION} && \
+make clean && \
+make  && \
+cd .. && \
+mv MUSIC/bin/MUSIC /usr/bin/ && \
+mv MUSIC/bin/generate_multimappability_signal.csh /usr/bin/ && \
+mv MUSIC/bin/run_MUSIC.csh /usr/bin/ && \
+rm -Rf MUSIC
+
+chmod +x /usr/bin/*
+
+%environment
+export MUSIC_VERSION=6613c53
+
+%runscript
+exec /bin/bash "$@"

src/singularity_modules/samtools/1.7/build.sh

+#/bin/sh
+sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def
+singularity sign bin/samtools:1.7.sif

src/singularity_modules/samtools/1.7/samtools.def

+Bootstrap: docker
+From: alpine:3.8
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+SAMTOOLS_VERSION=1.7
+PACKAGES="git \
+             make \
+             gcc \
+             musl-dev \
+             zlib-dev \
+             ncurses-dev \
+             bzip2-dev \
+             xz-dev \
+             bash"
+apk update && \
+apk add ${PACKAGES}
+
+git clone https://github.com/samtools/htslib.git && \
+cd htslib && \
+git checkout ${SAMTOOLS_VERSION}  && \
+cd .. && \
+git clone https://github.com/samtools/samtools.git && \
+cd samtools && \
+git checkout ${SAMTOOLS_VERSION} && \
+make && \
+cp samtools /usr/bin/
+
+%environment
+export SAMTOOLS_VERSION=1.7
+
+%runscript
+exec /bin/bash "$@"