diff --git a/src/singularity_modules/music/6613c53/build.sh b/src/singularity_modules/music/6613c53/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..12d1b96e2d47cc889ec4ca0c9f13a33fd49f612f --- /dev/null +++ b/src/singularity_modules/music/6613c53/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/music:6613c53.sif src/singularity_modules/music/6613c53/music.def +singularity sign bin/music:6613c53.sif diff --git a/src/singularity_modules/music/6613c53/music.def b/src/singularity_modules/music/6613c53/music.def new file mode 100644 index 0000000000000000000000000000000000000000..fe9b6b1e18fa815ac7dc2739788dc08a1bef53ce --- /dev/null +++ b/src/singularity_modules/music/6613c53/music.def @@ -0,0 +1,45 @@ +Bootstrap: docker +From: alpine:3.8 + +%labels +MAINTAINER Laurent Modolo + +%post +MUSIC_VERSION=6613c53 +SAMTOOLS_VERSION=1.7 +PACKAGES="git \ + make \ + gcc \ + musl-dev \ + zlib-dev \ + ncurses-dev \ + bzip2-dev \ + xz-dev \ + ca-certificates \ + bash" + +apk update && \ +apk add ${PACKAGES} + +apt-get update && \ +apt-get install -y --no-install-recommends ${PACKAGES} && \ +apt-get clean + +git clone https://github.com/gersteinlab/MUSIC.git && \ +cd MUSIC && \ +git checkout ${MUSIC_VERSION} && \ +make clean && \ +make && \ +cd .. && \ +mv MUSIC/bin/MUSIC /usr/bin/ && \ +mv MUSIC/bin/generate_multimappability_signal.csh /usr/bin/ && \ +mv MUSIC/bin/run_MUSIC.csh /usr/bin/ && \ +rm -Rf MUSIC + +chmod +x /usr/bin/* + +%environment +export MUSIC_VERSION=6613c53 + +%runscript +exec /bin/bash "$@" diff --git a/src/singularity_modules/samtools/1.7/build.sh b/src/singularity_modules/samtools/1.7/build.sh new file mode 100755 index 0000000000000000000000000000000000000000..695f99c1467d91d6484e77d24c5b7cbea99f4d15 --- /dev/null +++ b/src/singularity_modules/samtools/1.7/build.sh @@ -0,0 +1,3 @@ +#/bin/sh +sudo singularity build --force bin/samtools:1.7.sif src/singularity_modules/samtools/1.7/samtools.def +singularity sign bin/samtools:1.7.sif diff --git a/src/singularity_modules/samtools/1.7/samtools.def b/src/singularity_modules/samtools/1.7/samtools.def new file mode 100644 index 0000000000000000000000000000000000000000..c73f4e840ff3a9bd5c8be65e8fbbfab66c8b7910 --- /dev/null +++ b/src/singularity_modules/samtools/1.7/samtools.def @@ -0,0 +1,35 @@ +Bootstrap: docker +From: alpine:3.8 + +%labels +MAINTAINER Laurent Modolo + +%post +SAMTOOLS_VERSION=1.7 +PACKAGES="git \ + make \ + gcc \ + musl-dev \ + zlib-dev \ + ncurses-dev \ + bzip2-dev \ + xz-dev \ + bash" +apk update && \ +apk add ${PACKAGES} + +git clone https://github.com/samtools/htslib.git && \ +cd htslib && \ +git checkout ${SAMTOOLS_VERSION} && \ +cd .. && \ +git clone https://github.com/samtools/samtools.git && \ +cd samtools && \ +git checkout ${SAMTOOLS_VERSION} && \ +make && \ +cp samtools /usr/bin/ + +%environment +export SAMTOOLS_VERSION=1.7 + +%runscript +exec /bin/bash "$@"