kallisto: add singularity files

src/singularity_modules/kallisto/0.43.1/build.sh

+#/bin/sh
+sudo singularity build --force bin/kallisto:0.43.1.sif src/singularity_modules/kallisto/0.43.1/kallisto.def
+singularity sign bin/kallisto:0.43.1.sif

src/singularity_modules/kallisto/0.43.1/kallisto.def

+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+KALLISTO_VERSION=0.43.1
+PACKAGES="curl \
+ca-certificates"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+curl -k -L  https://github.com/pachterlab/kallisto/releases/download/v${KALLISTO_VERSION}/kallisto_linux-v${KALLISTO_VERSION}.tar.gz -o kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+tar xzf kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+cp kallisto_linux-v${KALLISTO_VERSION}/kallisto /usr/bin && \
+rm -Rf kallisto_linux-v${KALLISTO_VERSION}*
+
+%environment
+export KALLISTO_VERSION=0.44.0
+
+%runscript
+exec /bin/bash "$@"

src/singularity_modules/kallisto/0.44.0/build.sh

+#/bin/sh
+sudo singularity build --force bin/kallisto:0.44.0.sif src/singularity_modules/kallisto/0.44.0/kallisto.def
+singularity sign bin/kallisto:0.44.0.sif

src/singularity_modules/kallisto/0.44.0/kallisto.def

+Bootstrap: docker
+From: ubuntu:18.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+KALLISTO_VERSION=0.44.0
+PACKAGES="curl \
+ca-certificates"
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+curl -k -L  https://github.com/pachterlab/kallisto/releases/download/v${KALLISTO_VERSION}/kallisto_linux-v${KALLISTO_VERSION}.tar.gz -o kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+tar xzf kallisto_linux-v${KALLISTO_VERSION}.tar.gz && \
+cp kallisto_linux-v${KALLISTO_VERSION}/kallisto /usr/bin && \
+rm -Rf kallisto_linux-v${KALLISTO_VERSION}*
+
+%environment
+export KALLISTO_VERSION=0.44.0
+
+%runscript
+exec /bin/bash "$@"