Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
nlecouvr
nextflow
Commits
5a252dbe
Commit
5a252dbe
authored
Jan 19, 2022
by
nlecouvr
Browse files
adding kalisto
parent
ec7128a5
Changes
1
Hide whitespace changes
Inline
Side-by-side
src/RNASeq.nf
View file @
5a252dbe
...
...
@@ -3,6 +3,7 @@ nextflow.enable.dsl=2
include { fastp } from "./nf_modules/fastp/main.nf"
include { fasta_from_bed } from "./nf_modules/bedtools/main.nf"
include { index_fasta; mapping_fastq } from './nf_modules/kallisto/main.nf'
params.fastq = "data/fastq/*_{1,2}.fastq"
...
...
@@ -29,4 +30,6 @@ channel
workflow {
fastp(fastq_files)
fasta_from_bed(fasta_files, bed_files)
index_fasta(fasta_from_bed.out.fasta)
mapping_fastq(index_fasta.out.index.collect(), fastp.out.fastq)
}
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment