Commits · dde8e8a29c59a80a67443db3db42ee3b8e30fdd2 · nfontrod / nextflow · GitLab

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Mar 06, 2019
- deeptools: add singularity to files · dde8e8a2
  Laurent Modolo authored 6 years ago
  
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  dde8e8a2
- cutadapt: add singularity to nf files and add -resume to all tests.sh · 60040ed6
  Laurent Modolo authored 6 years ago
  
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  60040ed6
- nf_modules: update config files to match psmn lowercase module names · 80b5c871
  Laurent Modolo authored 6 years ago
  
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  80b5c871
- update_tools.sh: add update tool for psmn module · 67f677d7
  Laurent Modolo authored 6 years ago
  
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  67f677d7
Mar 05, 2019
- update psmn_modules to lowercase version · 5b10d565
  Laurent Modolo authored 6 years ago
  
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  5b10d565
- update psmn_modules · f0625618
  Laurent Modolo authored 6 years ago
  
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  f0625618
- update_tools.sh: auto update for singularity docker and nf modules · 45ce7f4b
  Laurent Modolo authored 6 years ago
  
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  45ce7f4b
- singularity build.sh: add error catch on build · 789625d7
  Laurent Modolo authored 6 years ago
  
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  789625d7
- ucsc: add singularity files · d98673b6
  Laurent Modolo authored 6 years ago
  
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  d98673b6
- trimmomatic: add singularity files · f645f605
  Laurent Modolo authored 6 years ago
  
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  f645f605
- tophat: add singularity files · ebf79d0c
  Laurent Modolo authored 6 years ago
  
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  ebf79d0c
Mar 04, 2019
- sratoolkit: add singularity files · 976e5e03
  Laurent Modolo authored 6 years ago
  
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  976e5e03
- samblaster: add singularity files · fe2a22eb
  Laurent Modolo authored 6 years ago
  
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  fe2a22eb
- salmon: add singularity files · 086ccdb8
  Laurent Modolo authored 6 years ago
  
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  086ccdb8
- rsem: add singularity files · 54834540
  Laurent Modolo authored 6 years ago
  
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  54834540
- pigz: add singularity files · 97f4337f
  Laurent Modolo authored 6 years ago
  
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  97f4337f
- picard: add PicardCommandLine for singularity · a8472a83
  Laurent Modolo authored 6 years ago
  
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  a8472a83
- picard: add singularity files · 8e82fe73
  Laurent Modolo authored 6 years ago
  
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  8e82fe73
- samtools: add singularity files · 4a1b22a8
  Laurent Modolo authored 6 years ago
  
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  4a1b22a8
- multiqc: add singularity files · dffc6644
  Laurent Modolo authored 6 years ago
  
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  dffc6644
- kallisto: add singularity files · 2c69d031
  Laurent Modolo authored 6 years ago
  
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  2c69d031
- htseq: add singularity files · ceabe427
  Laurent Modolo authored 6 years ago
  
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  ceabe427
- hisat2: add singularity files · e8fe1028
  Laurent Modolo authored 6 years ago
  
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  e8fe1028
- gatk: add singularity files · 7a4d983c
  Laurent Modolo authored 6 years ago
  
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  7a4d983c
- deeptools: add singularity files · 9fe7ac40
  Laurent Modolo authored 6 years ago
  
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  9fe7ac40
- file_handle: add singularity files · 220f0ecf
  Laurent Modolo authored 6 years ago
  
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  220f0ecf
- cutadapt: add singularity files · 870693e5
  Laurent Modolo authored 6 years ago
  
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  870693e5
- canu: add singularity files · adcfbaad
  Laurent Modolo authored 6 years ago
  
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  adcfbaad
- bioawk: add singularity files · 259e4d5b
  Laurent Modolo authored 6 years ago
  
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  259e4d5b
- bcftools: add singularity files · 9329a13d
  Laurent Modolo authored 6 years ago
  
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  9329a13d
- fastqc: add singularity to nf files · c55f3be5
  Laurent Modolo authored 6 years ago
  
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  c55f3be5
- update link for all modules names to lowercase · 9b037d38
  Laurent Modolo authored 6 years ago
  
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  9b037d38
- rename module to lowercase · 231fd9e6
  Laurent Modolo authored 6 years ago
  
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  231fd9e6
- fastqc: add singularity files · f0c49b7f
  Laurent Modolo authored 6 years ago
  
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  f0c49b7f
Mar 01, 2019
- Bowtie2: add singularity to nf files · cbd23ab6
  Laurent Modolo authored 6 years ago
  
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  cbd23ab6
- Bowtie: add singularity to nf files · 11a52fbc
  Laurent Modolo authored 6 years ago
  
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  11a52fbc
- Bowtie: add singularity files and add signature for singularity build · 3075c9c2
  Laurent Modolo authored 6 years ago
  
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  3075c9c2
- BWA: add singularity def · 1f430b33
  Laurent Modolo authored 6 years ago
  
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  1f430b33
- BWA: add singularity to nf files · a494361b
  Laurent Modolo authored 6 years ago
  
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  a494361b
- bedtools: update singularity path · edd04712
  Laurent Modolo authored 6 years ago
  
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  edd04712