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nfontrod
nextflow
Commits
259e4d5b
Verified
Commit
259e4d5b
authored
6 years ago
by
Laurent Modolo
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bioawk: add singularity files
parent
9329a13d
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src/singularity_modules/bioawk/1.0/bioawk.def
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src/singularity_modules/bioawk/1.0/bioawk.def
src/singularity_modules/bioawk/1.0/build.sh
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src/singularity_modules/bioawk/1.0/build.sh
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src/singularity_modules/bioawk/1.0/bioawk.def
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259e4d5b
Bootstrap: docker
From: ubuntu:18.04
%labels
MAINTAINER Laurent Modolo
%post
BIOAWK_VERSION=1.0
PACKAGES="git \
build-essential \
ca-certificates \
zlib1g-dev \
byacc"
apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
git clone https://github.com/lh3/bioawk.git && \
cd bioawk && \
git checkout tags/v${BIOAWK_VERSION} && \
make && \
cd .. && \
mv bioawk/bioawk /usr/bin/ && \
rm -Rf bioawk
%environment
export BIOAWK_VERSION=1.0
%runscript
exec /bin/bash "$@"
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src/singularity_modules/bioawk/1.0/build.sh
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259e4d5b
#/bin/sh
sudo
singularity build
--force
bin/bioawk:1.0.sif src/singularity_modules/bioawk/1.0/bioawk.def
singularity sign bin/bioawk:1.0.sif
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