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Verified Commit 259e4d5b authored by Laurent Modolo's avatar Laurent Modolo
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bioawk: add singularity files

parent 9329a13d
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Bootstrap: docker
From: ubuntu:18.04
%labels
MAINTAINER Laurent Modolo
%post
BIOAWK_VERSION=1.0
PACKAGES="git \
build-essential \
ca-certificates \
zlib1g-dev \
byacc"
apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
git clone https://github.com/lh3/bioawk.git && \
cd bioawk && \
git checkout tags/v${BIOAWK_VERSION} && \
make && \
cd .. && \
mv bioawk/bioawk /usr/bin/ && \
rm -Rf bioawk
%environment
export BIOAWK_VERSION=1.0
%runscript
exec /bin/bash "$@"
#/bin/sh
sudo singularity build --force bin/bioawk:1.0.sif src/singularity_modules/bioawk/1.0/bioawk.def
singularity sign bin/bioawk:1.0.sif
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