Commits · 4ca980bb61d5bb4189aa55767d626b18dac1481c · nfontrod / nextflow · GitLab

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Jul 26, 2018
- README.md: fix table for HISAT2 · 4ca980bb
  Laurent Modolo authored 6 years ago
  
  4ca980bb
Jul 25, 2018
- Cleanup SRAtoolkit files · b74bc642
  Laurent Modolo authored 6 years ago
  
  b74bc642
- README.md: add MultiQC and FastQC to the tools table for nf · a2cdaddc
  Laurent Modolo authored 6 years ago
  
  a2cdaddc
- MultiQC: add nf, test, and fix Dockerfile · a366ef20
  Laurent Modolo authored 6 years ago
  
  a366ef20
- Fastqc.nf: add tests · 47f170cd
  Laurent Modolo authored 6 years ago
  
  47f170cd
- FastQC.nf: add paired process · 6ccc5fa2
  Laurent Modolo authored 6 years ago
  
  6ccc5fa2
- FastQC/Dockerfile: add perl version · e8f0f815
  Laurent Modolo authored 6 years ago
  
  e8f0f815
- Merge branch 'elabaron/nextflow-master' into dev to get FastQC modif · 8f2c8522
  Laurent Modolo authored 6 years ago
  8f2c8522
- FastQC/fastqc.config: update sge config · 49faa7f0
  Laurent Modolo authored 6 years ago
  
  49faa7f0
- rm Ribowave module for when it's ready · 03b4c8d0
  Laurent Modolo authored 6 years ago
  
  03b4c8d0
- rm existing pipeline · 6a3bd949
  Laurent Modolo authored 6 years ago
  
  6a3bd949
- rm doc/TP_computaional_biologist.md · 854bb339
  Laurent Modolo authored 6 years ago
  
  854bb339
- Merge branch 'dev' into elabaron/nextflow-master · 2e353ad0
  Laurent Modolo authored 6 years ago
  
  2e353ad0
Jul 24, 2018
- fastqc.nf : don't save each report in a new folder · a3e3cbb0
  elabaron authored 6 years ago
  
  a3e3cbb0
- fastqc.nf : save only reports and not fastqc.gz file · 06a4d0d4
  elabaron authored 6 years ago
  
  06a4d0d4
- Add Ribowave and Fastq nf modules · f19a3ec0
  elabaron authored 6 years ago
  f19a3ec0
Jul 23, 2018
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · 4be336cf
  Laurent Modolo authored 6 years ago
  
  4be336cf
- Bowtie2/test.sh: fix nf path · 5c6080a9
  Laurent Modolo authored 6 years ago
  
  5c6080a9
- README.md: change list of tools to table · 4e36c3af
  Laurent Modolo authored 6 years ago
  
  4e36c3af
- README.md: add list of tools · 18e2c482
  Laurent Modolo authored 6 years ago
  
  18e2c482
Jul 13, 2018
- add pipeline Ribowave for HIV in PSMN · 424c95ff
  elabaron authored 6 years ago
  
  424c95ff
Jul 12, 2018
- add process in ribowave · b005ff34
  elabaron authored 6 years ago
  
  b005ff34
- add ribowave module · 3884efc1
  elabaron authored 6 years ago
  
  3884efc1
- add doc/TP_computational_biologist.md · c13d38c7
  elabaron authored 6 years ago
  
  c13d38c7
Jul 03, 2018
- Merge branch 'cigogne/nextflow-master' into dev · 1041a4af
  Laurent Modolo authored 6 years ago
  
  1041a4af
- HISAT2:2.0.0: add docker files · 686a58f8
  Laurent Modolo authored 6 years ago
  
  686a58f8
- Merge branch 'master' into 'dev' · 0d3ded33
  Laurent Modolo authored 6 years ago
  0d3ded33
Jun 27, 2018
- add process fastqdump · 52b510e4
  jganofsk authored 6 years ago
  
  52b510e4
Jun 20, 2018
- src/docker_modules/HISAT2/ : module Hisat2 added · 4a6cde0b
  your name authored 6 years ago
  
  4a6cde0b
- src/docker_modules/UrQt/d62c1f8/Dockerfile : solve conflict · f945638e
  your name authored 6 years ago
  
  f945638e
- src/docker_modules/UrQt/d62c1f8/Dockerfile : correction of the file · 30e42975
  your name authored 6 years ago
  
  30e42975
- TP_computational_biologists.md: add git flow link · 75375e05
  Laurent Modolo authored 6 years ago
  
  75375e05
- TP_computational_biologists.md · 946942bd
  Laurent Modolo authored 6 years ago
  
  946942bd
Jun 19, 2018
- TP_computational_biologists.md: add merge instruction · 53680ef9
  Laurent Modolo authored 6 years ago
  
  53680ef9
- TP_computational_biologists.md: add .nf and .config section · 246784cb
  Laurent Modolo authored 6 years ago
  
  246784cb
- TP_computational_biologists.md: fix typo · fd1fb24b
  Laurent Modolo authored 6 years ago
  
  fd1fb24b
- TP_computational_biologists.md: add links for files · 6bb48b6e
  Laurent Modolo authored 6 years ago
  
  6bb48b6e
Jun 18, 2018
- TP_computational_biologists.md: add Docker and SGE section · 077944ba
  Laurent Modolo authored 6 years ago
  
  077944ba
- kallisto.config: update to the last kallisto version · 3d96bc33
  Laurent Modolo authored 6 years ago
  
  3d96bc33
- Kallisto/0.44.0: add Dockerfile · e9a183e3
  Laurent Modolo authored 6 years ago
  
  e9a183e3