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Unverified Commit 1900998a authored by Laurent Modolo's avatar Laurent Modolo
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MultiQC: nf update psmn config

parent 68aa07a8
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profiles { profiles {
docker { docker {
docker.temp = 'auto' docker.temp = 'auto'
...@@ -14,7 +15,8 @@ profiles { ...@@ -14,7 +15,8 @@ profiles {
psmn { psmn {
process{ process{
withname: fastqc_fastq { withname: fastqc_fastq {
beforeScript = "module purge; module load FastQC/0.11.5" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "FastQC/0.11.5"
executor = "psmn" executor = "psmn"
cpus = 1 cpus = 1
memory = "5GB" memory = "5GB"
...@@ -24,7 +26,8 @@ profiles { ...@@ -24,7 +26,8 @@ profiles {
queue = 'monointeldeb128' queue = 'monointeldeb128'
} }
withname: multiqc { withname: multiqc {
beforeScript = "module purge; module load FastQC/1.0" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "MultiQC/1.0"
executor = "psmn" executor = "psmn"
cpus = 1 cpus = 1
memory = "5GB" memory = "5GB"
...@@ -36,3 +39,4 @@ profiles { ...@@ -36,3 +39,4 @@ profiles {
} }
} }
} }
...@@ -14,7 +14,8 @@ profiles { ...@@ -14,7 +14,8 @@ profiles {
psmn { psmn {
process{ process{
withname: fastqc_fastq { withname: fastqc_fastq {
beforeScript = "module purge; module load FastQC/0.11.5" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "FastQC/0.11.5"
executor = "psmn" executor = "psmn"
cpus = 1 cpus = 1
memory = "5GB" memory = "5GB"
...@@ -24,7 +25,8 @@ profiles { ...@@ -24,7 +25,8 @@ profiles {
queue = 'monointeldeb128' queue = 'monointeldeb128'
} }
withname: multiqc { withname: multiqc {
beforeScript = "module purge; module load FastQC/1.0" beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules"
module = "MultiQC/1.0"
executor = "psmn" executor = "psmn"
cpus = 1 cpus = 1
memory = "5GB" memory = "5GB"
......
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