Commits · rnaseq · Gael Yvert / nextflow

Jun 26, 2018
- src/docker_modules/R: add docker recipe for R compilation from source · 403777aa
  gael authored 6 years ago
  
  403777aa
Jun 15, 2018
- src/RNASeq.nf: do not print intermediary results · d907622b
  gael authored 6 years ago
  
  d907622b
- RNASeq.nf: trimming process now works on paired files · 124198e4
  gael authored 6 years ago
  
  124198e4
- RNASeq.nf: remove argument inputs for mapping · e6be013b
  gael authored 6 years ago
  
  e6be013b
- RNASeq.nf and .config: add mapping process with Kallisto · b683816a
  gael authored 6 years ago
  
  b683816a
- RNASeq.nf and .config: add Bedtool fasta-from-bed process · 2340cfb0
  gael authored 6 years ago
  
  2340cfb0
- Merge branch 'master' of https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow into rnaseq · fd27cf6c
  gael authored 6 years ago
  
  Update with curated UrQt Dockerfile, by git remote add upstream https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow.git, followed by git pull upstream master
  fd27cf6c
- FAQ.txt: created (answers received from Laurent Modolo) · 871458ef
  gael authored 6 years ago
  
  871458ef
- RNASeq.config: add profile for trimming process · 9cc4e30c
  gael authored 6 years ago
  
  9cc4e30c
- RNASeq.nf: connect processes · 6f969784
  gael authored 6 years ago
  
  6f969784
- RNASeq.nf: add trimming with urqt · fdaaf5e8
  gael authored 6 years ago
  
  fdaaf5e8
Jun 14, 2018
- RNASeq.nf: remove single-end process · 4d08a597
  gael authored 6 years ago
  
  4d08a597
- RNASeq.config: created · 3d20efde
  gael authored 6 years ago
  
  3d20efde
- RNASeq.nf: created, with call of cutadapt · ed80e5cc
  gael authored 6 years ago
  
  ed80e5cc
- fasta_sampler.nf: individualize output filenames · c7c8cb1f
  gael authored 6 years ago
  
  c7c8cb1f
- fasta_sampler.nf: add output dir · 191bc70c
  gael authored 6 years ago
  
  191bc70c
- fasta_sampler.nf: add initial channel · 937ee2a9
  gael authored 6 years ago
  
  937ee2a9
- fasta_sampler.nf: created · eea17b57
  gael authored 6 years ago
  
  eea17b57
Jun 07, 2018
- README.md : add infos on forking and syncing · 4b81bc8b
  Laurent Modolo authored 6 years ago
  
  4b81bc8b
- paired.nf files : pass the pair_id information in output · 5236de95
  Laurent Modolo authored 6 years ago
  
  5236de95
- bedtools.nf: fix fasta params · 39257434
  Laurent Modolo authored 6 years ago
  
  39257434
Jun 06, 2018
- UrQt: Dockerfile fix git version · a2d065e4
  Laurent Modolo authored 6 years ago
  
  a2d065e4
- TP.md: add nextflow options · 6289b049
  Laurent Modolo authored 6 years ago
  
  6289b049
- Merge branch 'master' of gitlab_lbmc:pipelines/nextflow · b8f2a45f
  Laurent Modolo authored 6 years ago
  
  b8f2a45f
- add sge config for some modules · 3454e1e8
  Laurent Modolo authored 6 years ago
  
  3454e1e8
- TP.md: fix typo · 1e57a68d
  Laurent Modolo authored 6 years ago
  
  1e57a68d
- TP.md: PSMN section · 98db0358
  Laurent Modolo authored 6 years ago
  
  98db0358
- Kallisto.nf: fix paired end · 0dba9f2b
  Laurent Modolo authored 6 years ago
  
  0dba9f2b
- Kallisto.nf: fix paired name · 1c82c356
  Laurent Modolo authored 6 years ago
  
  1c82c356
- urqt.nf: improve input · a97e28f0
  Laurent Modolo authored 6 years ago
  
  a97e28f0
- trimming: make output channel more clear · 52d58451
  Laurent Modolo authored 6 years ago
  
  52d58451
- TP.md: add info on project visibility · 462e3dd0
  Laurent Modolo authored 6 years ago
  
  462e3dd0
- TP.md: add Kallisto section · efbf5499
  Laurent Modolo authored 6 years ago
  
  efbf5499
- TP.md: add bedtool section · 955c41f2
  Laurent Modolo authored 6 years ago
  
  955c41f2
- BEDtools: add tests files · b6575e65
  Laurent Modolo authored 6 years ago
  
  b6575e65
- UrQt: fix docker container version · 4d440098
  Laurent Modolo authored 6 years ago
  
  4d440098
- mv test.sh file from docker_modules to nf_modules · 8aee48b9
  Laurent Modolo authored 6 years ago
  
  8aee48b9
- doc: add webide.png · d254a0d5
  Laurent Modolo authored 6 years ago
  
  d254a0d5
- TP.md: add cutadapt.config section · 7449f56c
  Laurent Modolo authored 6 years ago
  
  7449f56c
Jun 05, 2018
- TP.md: add cutadapt and urqt section · f495e035
  Laurent Modolo authored 6 years ago
  
  f495e035