src/RNASeq.nf: do not print intermediary results

src/RNASeq.nf

@@ -21,7 +21,7 @@ Channel
 
 process adaptor_removal {
   tag "$pair_id"
-  publishDir "results/fastq/adaptor_removal/", mode: 'copy'
+  /* publishDir "results/fastq/adaptor_removal/", mode: 'copy' */
 
   input:
   set pair_id, file(reads) from fastq_files
@@ -52,7 +52,7 @@ process adaptor_removal {
 process trimming {
   tag "${reads}"
   cpus 4
-  publishDir "results/fastq/trimming/", mode: 'copy'
+  /* publishDir "results/fastq/trimming/", mode: 'copy' */
 
   input:
   set pair_id, file(reads) from fastq_files_cut
@@ -96,7 +96,7 @@ Channel
 process fasta_from_bed {
   tag "${bed.baseName}"
   cpus 4
-  publishDir "results/fasta/", mode: 'copy'
+  /* publishDir "results/fasta/", mode: 'copy' */
 
   input:
   file fasta from fasta_files
@@ -115,7 +115,7 @@ bedtools getfasta -name \
 
 process index_fasta {
   tag "$fasta.baseName"
-  publishDir "results/mapping/index/", mode: 'copy'
+  /* publishDir "results/mapping/index/", mode: 'copy' */
 
   input:
     file fasta from fasta_files_extracted