From d907622b963cd5162b6d4549b328e7c7f83531d9 Mon Sep 17 00:00:00 2001
From: gael <gael@ornati.biologie.ens-lyon.fr>
Date: Fri, 15 Jun 2018 17:37:16 +0200
Subject: [PATCH] src/RNASeq.nf: do not print intermediary results
---
src/RNASeq.nf | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/RNASeq.nf b/src/RNASeq.nf
index 37941eb..29ea0f6 100644
--- a/src/RNASeq.nf
+++ b/src/RNASeq.nf
@@ -21,7 +21,7 @@ Channel
process adaptor_removal {
tag "$pair_id"
- publishDir "results/fastq/adaptor_removal/", mode: 'copy'
+ /* publishDir "results/fastq/adaptor_removal/", mode: 'copy' */
input:
set pair_id, file(reads) from fastq_files
@@ -52,7 +52,7 @@ process adaptor_removal {
process trimming {
tag "${reads}"
cpus 4
- publishDir "results/fastq/trimming/", mode: 'copy'
+ /* publishDir "results/fastq/trimming/", mode: 'copy' */
input:
set pair_id, file(reads) from fastq_files_cut
@@ -96,7 +96,7 @@ Channel
process fasta_from_bed {
tag "${bed.baseName}"
cpus 4
- publishDir "results/fasta/", mode: 'copy'
+ /* publishDir "results/fasta/", mode: 'copy' */
input:
file fasta from fasta_files
@@ -115,7 +115,7 @@ bedtools getfasta -name \
process index_fasta {
tag "$fasta.baseName"
- publishDir "results/mapping/index/", mode: 'copy'
+ /* publishDir "results/mapping/index/", mode: 'copy' */
input:
file fasta from fasta_files_extracted
--
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