Commits · f51bf1e4d50dd21bfe4e01d9f4251c0fac2d2a9a · fmortreu / nextflow

"README.md" did not exist on "8f34bbf7c817caa925b906a088d8d62b22fd9f46"

Jun 05, 2018
- mv nf_modules to docker_modules · f51bf1e4
  Laurent Modolo authored 6 years ago
  
  f51bf1e4
- rm src/nf_test.config · a0fea3c5
  Laurent Modolo authored 6 years ago
  
  a0fea3c5
- make tests.sh files executable · aac63da9
  Laurent Modolo authored 6 years ago
  
  v0.1.0
  
  aac63da9
- RSEM: fix dockerfile and add nf and test files · 4d8776b9
  Laurent Modolo authored 6 years ago
  
  4d8776b9
- change collect to toList in nf files and run tests with multiple fastq · f7f61d07
  Laurent Modolo authored 6 years ago
  
  f7f61d07
- Kallisto: nf fix index for single-end · 5f4bd25b
  Laurent Modolo authored 6 years ago
  
  5f4bd25b
- Kallisto: config fix module name · 91613eea
  Laurent Modolo authored 6 years ago
  
  91613eea
Jun 04, 2018
- Kallisto: add nf and tests files · f0d5b150
  Laurent Modolo authored 6 years ago
  
  f0d5b150
- HTSeq: add nf and tests files · 072e204a
  Laurent Modolo authored 6 years ago
  
  072e204a
- fix docker configuration · b0a4d2c1
  Laurent Modolo authored 6 years ago
  
  b0a4d2c1
- Bowtie2: config fix module name · 018f08c7
  Laurent Modolo authored 6 years ago
  
  018f08c7
- add publishDir · 5b1011f6
  Laurent Modolo authored 6 years ago
  
  5b1011f6
- Bowtie2: add nf files and tests · 786e69de
  Laurent Modolo authored 6 years ago
  
  786e69de
- Bowtie2: add samtools to Dockerfile · f594ce88
  Laurent Modolo authored 6 years ago
  
  f594ce88
- SAMtools.config: fix container name · 2a51f02d
  Laurent Modolo authored 6 years ago
  
  2a51f02d
- SAMtools: add nf and test scripts · e77f630e
  Laurent Modolo authored 6 years ago
  
  e77f630e
Jun 01, 2018
- UrQt: add tests · 051b3925
  Laurent Modolo authored 6 years ago
  
  051b3925
- UrQt: add tests, nf and config · 86a16ba6
  Laurent Modolo authored 6 years ago
  
  86a16ba6
- cutadapt.nf: improve description · a55eb6da
  Laurent Modolo authored 6 years ago
  
  a55eb6da
- cutadapt: add tests and config · 2c488dbf
  Laurent Modolo authored 6 years ago
  
  2c488dbf
May 31, 2018
- cutadapt.config: add config file for docker · ae7f6a84
  Laurent Modolo authored 6 years ago
  
  ae7f6a84
- cutadapt.nf: add trimming script · 9ae3505c
  Laurent Modolo authored 6 years ago
  
  9ae3505c
- cutadapt.nf: adaptator trimming code for paired and single-ends · aafb78a0
  Laurent Modolo authored 6 years ago
  
  aafb78a0
- UrQt/d62c1f8: add docker files · 083ce11c
  Laurent Modolo authored 6 years ago
  
  083ce11c
- RSEM/1.3.0: add docker files · 211d7cd7
  Laurent Modolo authored 6 years ago
  
  211d7cd7
- update sge_module · 149a6531
  Laurent Modolo authored 6 years ago
  
  149a6531
May 30, 2018
- Salmon/0.8.2: add docker files · a2ddd33f
  Laurent Modolo authored 6 years ago
  
  a2ddd33f
- MultiQC/1.0: add docker files · 65508b53
  Laurent Modolo authored 6 years ago
  
  65508b53
- Trimmomatic/0.36: add docker files · deb2e053
  Laurent Modolo authored 6 years ago
  
  deb2e053
- deepTools/3.0.2: add docker files · 950416c3
  Laurent Modolo authored 6 years ago
  
  950416c3
- HTSeq/0.8.0: add docker files · bf9c81d8
  Laurent Modolo authored 6 years ago
  
  bf9c81d8
- Kallisto/0.43.1: install file for docker · 7bb1e1d0
  Laurent Modolo authored 6 years ago
  
  7bb1e1d0
May 25, 2018
- add docker files for file_handle:0.1.1 · d533b0bf
  Laurent Modolo authored 6 years ago
  
  d533b0bf
- add docker files for pigz · 8fc035f3
  Laurent Modolo authored 6 years ago
  
  8fc035f3
- add docker files for canu:1.6 · ff8b0cd9
  Laurent Modolo authored 6 years ago
  
  ff8b0cd9
- add docker files for tophat:2.1.1 · b9c08af5
  Laurent Modolo authored 6 years ago
  
  b9c08af5
- add docker files for SRAtoolkit:2.8.2 · 3631e459
  Laurent Modolo authored 6 years ago
  
  3631e459
- add docker files for samtools:1.7 · 2411ee58
  Laurent Modolo authored 6 years ago
  
  2411ee58
- docker files for FastQC:0.11.5 · bdceaf98
  Laurent Modolo authored 6 years ago
  
  bdceaf98
- add dockerfile for Bowtie2:2.3.4.1 · e6a0253b
  Laurent Modolo authored 6 years ago
  
  e6a0253b