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Verified Commit 051b3925 authored by Laurent Modolo's avatar Laurent Modolo
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UrQt: add tests

parent 86a16ba6
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nextflow src/nf_modules/UrQt/tests/trimming_paired.nf \
-c src/nf_modules/UrQt/UrQt.config \
-c src/nf_modules/UrQt/urqt.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
nextflow src/nf_modules/UrQt/tests/trimming_single.nf \
-c src/nf_modules/UrQt/UrQt.config \
-c src/nf_modules/UrQt/urqt.config \
-profile docker \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq"
......@@ -62,6 +62,7 @@ process trimming {
script:
"""
UrQt --t 20 --m ${task.cpus} --gz \
--in ${reads} \
--out ${reads.baseName}_trim.fastq.gz \
......
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