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Mapping and variant calling of reads on great ape reference genomes. From Julie Plantade.
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Gene expression in cells expressing the anti-viral protein ISG20 or not. RNAseq analysis and graphic representations.
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Script to detect recombination tracts on the output of an analysis of the SNPs from a donor strain on a transformed bacteria. Project from Léo Hardy and Xavier Charpentier
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jseimand / nextflow
CeCILL Free Software License Agreement v2.1This repository is a template containing scripts to help you build your own nextflow pipeline.
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nfontrod / bigwig_compo
CeCILL Free Software License Agreement v2.1Updated -
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LBMC / Hub / file_handle
CeCILL Free Software License Agreement v2.1Updated -
lgely / nextflow
CeCILL Free Software License Agreement v2.1This repository is a template containing scripts to help you build your own nextflow pipeline.
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Source code for generating the main figures of the article "Reduction of a sothcastic model of gene expression: Lagrangian dynamics gives acces to basins of attraction as cell types and metastability".
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nfontrod / bedtools_venn
CeCILL Free Software License Agreement v2.1Create venn diagram from 2 bed files
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LBMC / RMI2 / siDDX42 in A549 and U87-MG cells
CeCILL Free Software License Agreement v2.1This repository allow to reproduce the analysis and create figures as in the current publication.
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Coevolution analysis: Retrieval of orthologs of ComR and RocC in Legionella, alignment and phylogeny.
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Xavier Grand / ChIPster
CeCILL Free Software License Agreement v2.1Pipeline dedicated to ChIPseq.
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This repository is a template containing scripts to help you build your own nextflow pipeline.
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