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This repository is a template containing scripts to help you build your own nextflow pipeline.
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LBMC / yvertlab / evolution_plasticity / plasticity_mutation / colony_RNASeq_bioinformatics / genotypy
GNU Affero General Public License v3.0Updated -
LBMC / yvertlab / evolution_plasticity / plasticity_mutation / HTRfit
GNU General Public License v3.0 onlyUpdated -
LBMC / Hub / formations / scRNA
CeCILL Free Software License Agreement v2.1Formation on scRNA data analysis
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A single-cell RNA-Seq data analysis performed with scanpy, starting from the integration of multiple datasets for removing the batch effect, up to cell trajectory inference with PAGA
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LBMC / RMI2 / fexi_splitter
CeCILL Free Software License Agreement v2.1Updated -
Functional analysis of RNAseq differential expression analysis, on competence mutants. Use of COG annotation for enrichment analysis in Legionella pneumophila.
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LBMC / Bernard / Chipseq
MIT LicenseUpdated -
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RDP / petunia_star_wico_rnaseq
Creative Commons Zero v1.0 UniversalRNA-seq analysis of cell layer-specific expression of gene PhDEF in Petunia petals
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LBMC / Hub / PSMN / modules
CeCILL Free Software License Agreement v2.1Updated -
LBMC / Hub / good_practices
CeCILL Free Software License Agreement v2.1Updated -
IGFL / J.Enriquez / Myo_ID / ClusteringAnalysis
CeCILL Free Software License Agreement v2.1Infer identity of myoblasts, at several development stages, through Seurat single-cell clustering analysis.
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Scripts for paper Evaluation of genome and base editing tools in maize protoplasts (Fierlej et al, Front. Plant Sci. 2022)
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ericci / Covid_machine_learning
GNU General Public License v3.0 onlyUpdated