Skip to content
Snippets Groups Projects
Commit 63984ef0 authored by dcluet's avatar dcluet
Browse files

Update README

parent de4383a2
No related branches found
No related tags found
No related merge requests found
......@@ -201,19 +201,22 @@ For some labeling with small and extremely bright noise, the **enhance signal**
**Research Engine**
===
||**ORIGINAL PICTURE**||
|**ORIGINAL PICTURE**|||
|:------------------:|:---------------------:|:---------------------:|
||![Original Picture](doc/Original_Picture.jpg)||
|![Original Picture](doc/Original_Picture.jpg)|||
|First the tissue is detected on all selected slices.| | |
|**TISSUE DETECTION**|**PARTICLES DETECTION iteration 1**|**PARTICLES DETECTION iteration 2**|
|`run("Gaussian Blur...", "sigma=20 slice");`|`run("Gaussian Blur...", "sigma=1 stack");`|`run("Gaussian Blur...", "sigma=1 stack");`|
|![Step 1](doc/Tissue1.jpg) |![Step 1](doc/Iteration1.jpg)|![Step 1](doc/Iteration1-2.jpg)|
||`run("Maximum...", "radius=5 stack");`|`run("Maximum...", "radius=5 stack");`|
| |![Step 2](doc/Iteration2.jpg)|![Step 2](doc/Iteration2-2.jpg)|
|`setAutoThreshold("Huang dark");`|`setAutoThreshold("MaxEntropy dark");`|`setAutoThreshold("MaxEntropy dark");`|
|![Step 2](doc/Tissue2.jpg)|![Step 3](doc/Iteration3.jpg)|![Step 3](doc/Iteration3-2.jpg)|
|`run("Analyze Particles...", "size=100000-Infinity pixel show=Nothing add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|
|![Step 3](doc/Tissue3.jpg)|![Step 4](doc/Iteration4.jpg)|![Step 4](doc/Iteration4-2.jpg)|
|**This shape is used to characterize the tissue-embed particles.**|**Removal of all unwanted particles.**|**Removal of all unwanted particles.**|
|`setAutoThreshold("Huang dark");`|`run("Maximum...", "radius=5 stack");`|`run("Maximum...", "radius=5 stack");`|
|![Step 2](doc/Tissue2.jpg)|![Step 2](doc/Iteration2.jpg)|![Step 2](doc/Iteration2-2.jpg)|
|`run("Analyze Particles...", "size=100000-Infinity pixel show=Nothing add slice");`|`setAutoThreshold("MaxEntropy dark");`|`setAutoThreshold("MaxEntropy dark");`|
|![Step 3](doc/Tissue3.jpg)|![Step 3](doc/Iteration3.jpg)|![Step 3](doc/Iteration3-2.jpg)|
|**This shape is used to characterize the<br>tissue-embed particles.**|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|`run("Analyze Particles...", "size="+ 1 +"-"+SizeMax+" add slice");`|
|**Continue with particles detection ->**|![Step 4](doc/Iteration4.jpg)|![Step 4](doc/Iteration4-2.jpg)|
||**Removal of all unwanted particles.**|**Removal of all unwanted particles.**|
| |**When several slices, removal of duplicates of the same particle.**|**When several slices, removal of duplicates of the same particle.**|
||**RESULT ON 5 SLICES**||
||![Result](doc/Result.jpg)||
| |**Removal of all particles on the Original Picture**| |
||**Continue to iteration 2 ->**| |
|||**RESULT ON 5 SLICES**|
|||![Result](doc/Result.jpg)|
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment